PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G417229_P02
Common NameZm.137280
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ZF-HD
Protein Properties Length: 266aa    MW: 28609.8 Da    PI: 7.3585
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G417229_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.38.9e-29134185457
        ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                        +rY+eCl+NhAa+lG+h++DGC+Efmps g+   aaal CaACgCHR+FHRre 
  GRMZM2G417229_P02 134 WRYRECLRNHAARLGAHVLDGCCEFMPSGGDG--AAALACAACGCHRSFHRREA 185
                        79*************************95544..99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.7E-26134185IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-23135184IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-7135184IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.818136184IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEYKRSSHAQ EEEEDEEEEE EEDDENEEEE EDEEEARGLR YTTAAVAPVG APQQQQPPLP  60
PPGFPPAHRQ QPPHAQLHPR KAERERDRAA GAQPHVRRHH QEPAKNGVLG GGAAPTSAPS  120
TLGLVPVVEA AQLWRYRECL RNHAARLGAH VLDGCCEFMP SGGDGAAALA CAACGCHRSF  180
HRREAVPGGG VAVSPSAAVT PTPTAGANSS RAIPLLLGPA AHAHAPAAPR AGVPGCPRPP  240
RWPSRPARSC AAPRPRPRRR RTRRWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255262RPRRRRTR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.241110.0ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G417229
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G417229_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0537790.0BT053779.1 Zea mays full-length cDNA clone ZM_BFb0160J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145687.11e-101uncharacterized protein LOC100279191
TrEMBLB7ZWT71e-100B7ZWT7_MAIZE; Uncharacterized protein
STRINGGRMZM2G417229_P011e-104(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-12homeobox protein 22