PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G419239_P01
Common NameZEAMMB73_007147, Zm.9667
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 260aa    MW: 28255.1 Da    PI: 8.033
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G419239_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+eEde+lv +v+ +G g+W++ +r  g+ R++k+c++rw +yl
  GRMZM2G419239_P01 14 RGAWTKEEDERLVAYVRAHGEGCWRSLPRAAGLLRCGKSCRLRWINYL 61
                       89******************************99************97 PP
2Myb_DNA-binding57.63e-1867111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg++T++Ed+l+v+++ +lG++ W++Ia++++ gRt++++k++w+++
  GRMZM2G419239_P01  67 RGNFTADEDDLIVKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                        89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.426961IPR017930Myb domain
SuperFamilySSF466891.35E-2913108IPR009057Homeodomain-like
SMARTSM007179.8E-141363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001675.05E-111661No hitNo description
PROSITE profilePS5129428.14362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2765116IPR009057Homeodomain-like
SMARTSM007174.6E-1766114IPR001005SANT/Myb domain
PfamPF002491.7E-1667111IPR001005SANT/Myb domain
CDDcd001671.25E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009751Biological Processresponse to salicylic acid
GO:1900384Biological Processregulation of flavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRSPCCEKA HTNRGAWTKE EDERLVAYVR AHGEGCWRSL PRAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TADEDDLIVK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIRRKLLGSG  120
IDPVTHRRVA GGAATTISFQ PSPNTAVAAA AETAAQAPIK AEETAAVKAP RCPDLNLDLC  180
ISPPCQHEDD GEEEEEELDL IKPAVVKREA LQAGHGHGHG LCLGCGLGGQ KGAAGCSCSN  240
GHHFLGLRTS VLDFRGLEMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.96670.0meristem| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G419239
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G419239_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2444130.0DQ244413.1 Zea mays clone 7309 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106009.20.0transcription factor MYB42
SwissprotP200251e-129MYB38_MAIZE; Myb-related protein Zm38
TrEMBLA0A3L6F1R10.0A0A3L6F1R1_MAIZE; Myb-related protein Zm38
TrEMBLK7UPS50.0K7UPS5_MAIZE; Myb transcription factor 42
STRINGGRMZM2G419239_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.14e-94myb domain protein 7
Publications ? help Back to Top
  1. Fornalé S, et al.
    Down-regulation of the maize and Arabidopsis thaliana caffeic acid O-methyl-transferase genes by two new maize R2R3-MYB transcription factors.
    Plant Mol. Biol., 2006. 62(6): p. 809-23
    [PMID:16941210]
  2. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]