PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G422644_P01
Common NameOrphan308, umc2762
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family DBB
Protein Properties Length: 205aa    MW: 22545.2 Da    PI: 5.7835
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G422644_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-07333434
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeH 34
                       ++C+ +e+ ++ lfC  ++  lC+ C ++ H
  GRMZM2G422644_P01  3 TICDVCESAPAVLFCAADEAALCRPCDEKVH 33
                       68**************************998 PP
2zf-B_box26.99.6e-095291237
           zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                       +  +C+ +e+ ++ ++Ce +++ lC +C ++ H g    H
  GRMZM2G422644_P01 52 KLARCDICENSPAFFYCEIDGTSLCLSCDMTVHVGgkrtH 91
                       6789*****************************6655556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.9E-9147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000212.24E-8345No hitNo description
PfamPF006435.2E-6341IPR000315B-box-type zinc finger
SMARTSM003363.3E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.5995196IPR000315B-box-type zinc finger
PfamPF006435.2E-75291IPR000315B-box-type zinc finger
CDDcd000217.52E-75584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MRTICDVCES APAVLFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLADP NKLARCDICE  60
NSPAFFYCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVPMEIKD  120
PENQREQNTP KEQMANHHNV NDPVSDGNCD GQGNIDSKMI DLNMRPARTH GQGSNSQTQG  180
VDLSVNNHDS PGVVPTSNSE RDAIK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1192350.0endosperm| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G422644
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G422644_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0537710.0BT053771.1 Zea mays full-length cDNA clone ZM_BFb0152K17 mRNA, complete cds.
GenBankBT0839560.0BT083956.1 Zea mays full-length cDNA clone ZM_BFb0058J10 mRNA, complete cds.
GenBankBT0880770.0BT088077.1 Zea mays full-length cDNA clone ZM_BFc0006E22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345639.11e-152uncharacterized protein LOC100193329
SwissprotC0SVM57e-76BBX19_ARATH; B-box zinc finger protein 19
TrEMBLB7ZWS91e-151B7ZWS9_MAIZE; B-box zinc finger protein 19
STRINGGRMZM2G422644_P011e-152(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103342225
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-78DBB family protein