PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G423292_P01
Common NameGBP20, ZEAMMB73_014409, Zm.1190
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 456aa    MW: 49716 Da    PI: 10.1695
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G423292_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57395.17e-30200297297
             DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                        ++ r+ws eDe+++L +li+f+ak+g    + +d++++++++ +++ +++s+ ql++K+rrLK+K+k   +++k+g++p++ ++hd+++++l
  GRMZM2G423292_P01 200 RPPRVWSPEDEVTILSALIEFRAKKGRlpASIQDTSKVHSQIIHQLTANASTAQLSDKVRRLKHKYKLLLTRSKNGRDPDLPTKHDRDVYQL 291
                        578************************777888*********************************************************** PP

             DUF573  92 skkiWg 97 
                        skk+Wg
  GRMZM2G423292_P01 292 SKKVWG 297
                        *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.9E-28202297IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MALKRSAAAA SLGSASDASD GEAGAARNSH RRRVSPSRSR SESPRPNLGP SAAASDTNRE  60
RSPRDHLDSD ADSDADAGAG AGRGARSSRL LGERSPSFHS NSDADVAGRS PSPRRNRERT  120
LHLHSDSDSD NSTTAAAAAS DDAGDASPLA IAHRASHIGT SNVKPVSTRP MDVPSRAAAG  180
SSQRRSKRRP SPHSPEHQKR PPRVWSPEDE VTILSALIEF RAKKGRLPAS IQDTSKVHSQ  240
IIHQLTANAS TAQLSDKVRR LKHKYKLLLT RSKNGRDPDL PTKHDRDVYQ LSKKVWGLKS  300
LLLVRGSRVS HEDTEDAEES NEEQEIEESD EDIENGWGLR GRTGKKPRAL TFENGNGNAI  360
VTAGRACHGD GSGRDDAEKG KQMYPYLWEA VEELSKEHPS GPIFRKAFGV LEKSKAGAVE  420
EKLRKFRMLE IRQQLRRMDL MKETVGLVLD ALEGAY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.11900.0ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G423292
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G423292_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279960.0KJ727996.1 Zea mays clone pUT6116 GeBP transcription factor (GBP20) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144205.20.0uncharacterized protein LOC100277066
TrEMBLK7UTP10.0K7UTP1_MAIZE; GLABROUS1 enhancer-binding protein-like
STRINGGRMZM2G423292_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Representative plantOGRP1071349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.16e-14DNA-binding storekeeper protein-related transcriptional regulator