PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G425236_P01
Common NameZm.29994
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ZF-HD
Protein Properties Length: 240aa    MW: 24975.7 Da    PI: 7.551
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G425236_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer86.82.2e-271362557
        ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                       +Y+eC++NhAa+lG++a DGC+E++p+   +g++aa+ CaACgCHRnFHR+  
  GRMZM2G425236_P01 13 VYRECMRNHAAKLGTYASDGCCEYTPD---DGQPAAMLCAACGCHRNFHRKAF 62
                       7*************************8...7899****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.5E-221361IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-201460IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.0761461IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.6E-211460IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.83E-14101176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-26103177IPR009057Homeodomain-like
TIGRFAMsTIGR015652.7E-26115176IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDQQQHQERP WEVYRECMRN HAAKLGTYAS DGCCEYTPDD GQPAAMLCAA CGCHRNFHRK  60
AFLADAAAGA HGGAHGAMLP SPGASPGYGM HHMAIAAAGM GGDAGAHGSG SGGRRRTRTK  120
FTDEQKERMA RLAERLGWRM PKREPGRALG DDEVGRFCRE IGVTRQVFKV WMHNHKSGGG  180
GSQGEGASAG AAGAAQTTSS STTRGGGGGG VVGGGGSMST AMMGADVEDD EEVRGSEMCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-181141821779ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.299940.0ear| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G425236
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G425236_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9718750.0EU971875.1 Zea mays clone 371882 ZF-HD protein dimerisation region containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151696.21e-174ZF-HD protein dimerisation region containing protein
SwissprotA2XLF42e-86ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV52e-86ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A1D6GJ081e-172A0A1D6GJ08_MAIZE; ZF-HD protein dimerization region containing protein
STRINGGRMZM2G425236_P011e-173(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-34homeobox protein 22