PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G427087_P01

Common Name

LOC100279100, THX31, ZEAMMB73_471837

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Trihelix

Protein Properties

Length: 206aa MW: 22628.8 Da PI: 11.707

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G427087_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	28.1	5.5e-09	18	78	1	65
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +Wt +e+laL +a++ + +++r+ l ++W++v+++ ++++ qC++k e+l++r + + GRMZM2G427087_P01 18 CWTTDETLALARAYTARRLAVGREHLTSADWAAVAAAAP----SKTARQCRHKVEKLRRRLRSNR 78 8*******************************99865....689***********988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.3E-7	17	79	No hit	No description
PROSITE profile	PS50090	6.26	19	71	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.7E-4	19	72	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MASPSPARAS GRRVPPPCWT TDETLALARA YTARRLAVGR EHLTSADWAA VAAAAPSKTA 60 RQCRHKVEKL RRRLRSNRRR PCPLLDAIDL LDVPSPPFFS KSQSRSTSRS SSPPPPAAAI 120 SSPSPPSPPA SPPRKRRRDD AGDEDGVSDV VGALRAIGEG FLRAEERRME AARETQRMRM 180 EMALRHLDAQ RRLMDALVGR IVDALD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	74	KLRRRLR
2	69	75	LRRRLRS
3	133	137	RKRRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.85715	0.0	meristem\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G427087

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G427087_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT066046	0.0	BT066046.2 Zea mays full-length cDNA clone ZM_BFb0189B18 mRNA, complete cds.
GenBank	DQ245467	0.0	DQ245467.1 Zea mays clone 15810 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001145617.2	1e-141	uncharacterized protein LOC100279100
TrEMBL	A0A3L6G695	1e-140	A0A3L6G695_MAIZE; Uncharacterized protein
TrEMBL	K7UKN9	1e-140	K7UKN9_MAIZE; FRIGIDA interacting protein 2
STRING	GRMZM2G427087_P01	1e-141	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13911	20	24
Representative plant	OGRP13172	4	5

Link Out ? help Back to Top
Phytozome	GRMZM2G427087_P01