PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G428470_P01
Common NameLOC100276948, ZEAMMB73_399432
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 318aa    MW: 33599.9 Da    PI: 9.5516
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G428470_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.85.1e-2258147186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +Wt++e+laLiea+r+++e+l++g+l++++W++v++++        +   +s +qC++k e+l+kry++++ ++ +r+++   ++p+f  l+
  GRMZM2G428470_P01  58 CWTHEETLALIEAYRDRWEALQKGNLRAADWDDVANAVtarcgrFPTATPKSGVQCRHKVEKLRKRYRAERSRSAGRSKG--PKWPFFPLLH 147
                        8*************************************998888788899*************************98443..47****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.3E-2257148No hitNo description
SMARTSM005951.3E-466150IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSSSCSDASR DDAVSSPDLP PLAAPVAAAA AAAAAAASSG GGIGLGGVGS GRRLPPPCWT  60
HEETLALIEA YRDRWEALQK GNLRAADWDD VANAVTARCG RFPTATPKSG VQCRHKVEKL  120
RKRYRAERSR SAGRSKGPKW PFFPLLHDLA GGGVPDPSPN AIVKIKTKGP APPASSPSPV  180
SSPSSEVEAV RSRSLHGLIS NGGAGSGLRF TIPKASRTKP VAAAAVKSER SGSEDDAESE  240
AMAEVAAALR AVGEGFLRME ERRLELSLQM EKERMESEMK RTQTMLDAQQ LFLEAFLGKQ  300
LQHKKAHVSP SSAAMEED
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.621880.0meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G428470
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G428470_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9658480.0EU965848.1 Zea mays clone 289347 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659928.10.0trihelix transcription factor ASIL1
TrEMBLA0A1X7YE920.0A0A1X7YE92_MAIZE; Uncharacterized protein
STRINGGRMZM2G428470_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Representative plantOGRP40591122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-27Trihelix family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]