PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G431156_P01
Common NameLOC100384181, ZEAMMB73_660042
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 214aa    MW: 23234.3 Da    PI: 8.4401
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G431156_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.3e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEde+lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
  GRMZM2G431156_P01 14 KGAWTKEEDERLVAYIRSHGEGCWRSLPSAAGLLRCGKSCRLRWMNYL 61
                       79******************************99************97 PP
2Myb_DNA-binding56.85.2e-1867111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg++T +Edel+++++++lG++ W++Ia  ++ gRt++++k++w+++
  GRMZM2G431156_P01  67 RGNFTDDEDELIIRLHALLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111
                        89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.237961IPR017930Myb domain
SMARTSM007171.6E-131363IPR001005SANT/Myb domain
SuperFamilySSF466893.49E-2913108IPR009057Homeodomain-like
PfamPF002491.9E-151461IPR001005SANT/Myb domain
CDDcd001673.61E-101661No hitNo description
PROSITE profilePS5129428.27462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2865116IPR009057Homeodomain-like
SMARTSM007178.4E-1766114IPR001005SANT/Myb domain
PfamPF002493.9E-1667111IPR001005SANT/Myb domain
CDDcd001671.10E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGRSPCCEKG HTNKGAWTKE EDERLVAYIR SHGEGCWRSL PSAAGLLRCG KSCRLRWMNY  60
LRPDLKRGNF TDDEDELIIR LHALLGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLLARG  120
IDPHAHHRPQ ALHHVAAAAL VPAPAAKPKP KPAESSDDGG RSSCSCSGSG SSAGEPRCPD  180
LNLDLSVGPP DAPTSPPPPC LCHRAWEACG CQAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29141167108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1612350.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G431156
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G431156_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283150.0KJ728315.1 Zea mays clone pUT6596 MYB transcription factor (MYB25) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655313.11e-155putative MYB DNA-binding domain superfamily protein isoform X1
SwissprotP813935e-88MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A287G8M51e-105A0A287G8M5_HORVV; Uncharacterized protein
TrEMBLC0PM921e-105C0PM92_MAIZE; Transcription repressor MYB6
STRINGGRMZM2G431156_P021e-106(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-82myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]