PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G438260_P01
Common NameHDZIV11_OCL11
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 750aa    MW: 82772.5 Da    PI: 5.722
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G438260_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-2067118556
                        SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +ft +ql++Le+ F+k+++p+ e+r+eLA+k+g++ rqVk+WFqNrR + k
  GRMZM2G438260_P01  67 KRFTVQQLQQLESSFQKCSHPDDEMRQELAAKVGISARQVKFWFQNRRSQIK 118
                        47**********************************************9876 PP
2START113.92.3e-362324564205
                        HHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
              START   4 eeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                        e+a +e+  ++  + p+W         + +++  q+f++ ++      + +ea r++++v + +++ v +l d++ +W + ++    +   +
  GRMZM2G438260_P01 232 ECAIKEFEMLVRDGTPLWLPTIggdVLNSKEYACQRFPRLHGtirpegFVVEATRDTAIVKGSAPDIVDILTDVP-RWYKAFPcivaALRAY 322
                        6677777777788888888888774344455557888888878888889**************************.*******99999999* PP

                        EEECTT.........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEE CS
              START  83 evissg.........galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghsk 163
                         vi sg          +l +++ +l + sp +p R+  f+R+++q   gd+v+vdvS++  q   e + s  + ++lpSg+li++k++g+++
  GRMZM2G438260_P01 323 HVIFSGpfasgnvliQELLQINVDLSVESPRPPlRNMKFLRITKQNANGDFVVVDVSINDVQGIHEqQGSQHKHTMLPSGCLIKDKGDGYCQ 414
                        ***************************************************************99988889999****************** PP

                        EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                        vtw+ h+++++++++ l+r++++sgla+ga++w+a lqr+ce
  GRMZM2G438260_P01 415 VTWIVHAEYEEASVPPLFRQFYQSGLAFGASRWLASLQRHCE 456
                        *****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-1759118IPR009057Homeodomain-like
PROSITE profilePS5007116.97360120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-1961118IPR009057Homeodomain-like
SMARTSM003891.7E-1963124IPR001356Homeobox domain
CDDcd000866.55E-1964118No hitNo description
PfamPF000463.9E-1867118IPR001356Homeobox domain
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PROSITE profilePS5084829.431220460IPR002913START domain
CDDcd088755.20E-73227456No hitNo description
SMARTSM002341.7E-10232457IPR002913START domain
PfamPF018521.4E-30265456IPR002913START domain
SuperFamilySSF559612.78E-17277456No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MVHEGQLKNT EPDIGVNMGD DELIYLPDIE EYDMDALMGD EDQLNTDQAI FCEEHNLDKV  60
SSSKRPKRFT VQQLQQLESS FQKCSHPDDE MRQELAAKVG ISARQVKFWF QNRRSQIKVR  120
SCGTENNKYR RQNAELLATN MELKEQLKGM TCSRCDAPTI MQKWQLMDEN AKLREMYSLA  180
SAELTKLMQE ANLPPSVILE DMALVTSMNP LSSNASSSRS TINQDELLSY VECAIKEFEM  240
LVRDGTPLWL PTIGGDVLNS KEYACQRFPR LHGTIRPEGF VVEATRDTAI VKGSAPDIVD  300
ILTDVPRWYK AFPCIVAALR AYHVIFSGPF ASGNVLIQEL LQINVDLSVE SPRPPLRNMK  360
FLRITKQNAN GDFVVVDVSI NDVQGIHEQQ GSQHKHTMLP SGCLIKDKGD GYCQVTWIVH  420
AEYEEASVPP LFRQFYQSGL AFGASRWLAS LQRHCEYMVV KHSIQVPTGC VSGSGVLTLS  480
ALGRWNLLEL AQRMMAIFYK TTSGLPTVEP GNIVTRWGRG CMGTTGEMLE PAVRMVLGNY  540
FGAMDGQPSP LQVLSATTTV WLPGTPPESV FNYLCNGQRR GEWDAFVCAG AVQELSSVAT  600
CPHLHGNAVS VLCPNVTNAA NNAMLFLQQT SIDVSRALVV YSVVEETMLR SVLDVSDDTS  660
NLVLLPSGFA ILPDGHGRAH HAAASNSSSA LAGLNGTAGC LLTAAYQVPV PFNNLRHPDV  720
QETYENAGKR ICHAIKKIMD AVGAPIVVPI
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G438260
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G438260_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN0036130.0JN003613.1 Zea mays cultivar A188 homeodomain leucine zipper family IV protein (HDZIV11_OCL11) mRNA, partial cds and 3' UTR.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318696.10.0homeobox-leucine zipper protein ROC6
TrEMBLA0A3L6FQ800.0A0A3L6FQ80_MAIZE; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLG2J5S50.0G2J5S5_MAIZE; Homeodomain leucine zipper family IV protein
STRINGGRMZM2G438260_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Representative plantOGRP1981722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.11e-102HD-ZIP family protein
Publications ? help Back to Top
  1. Javelle M, et al.
    Genome-wide characterization of the HD-ZIP IV transcription factor family in maize: preferential expression in the epidermis.
    Plant Physiol., 2011. 157(2): p. 790-803
    [PMID:21825105]