PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G438438_P02

Common Name

LOC100279540

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

ZF-HD

Protein Properties

Length: 253aa MW: 26000.2 Da PI: 7.1323

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G438438_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	107.2	9.3e-34	37	93	2	57
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 ++v Y+eClkNhAaslGgha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr + GRMZM2G438438_P02 37 TGVYYRECLKNHAASLGGHALDGCGEFMPSPEADpADPSSLRCAACGCHRNFHRRLP 93 5789****************************9*****************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.7E-28	39	92	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.7E-30	41	91	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-15	41	91	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	28.068	41	92	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEAVVDLKYL PVFPNGGVAA AKKKTRLGAA AVAGGQTGVY YRECLKNHAA SLGGHALDGC 60 GEFMPSPEAD PADPSSLRCA ACGCHRNFHR RLPELSPPPP LLALPPPPPP LAPAPAPAVA 120 SHAMRDSRTM RGEEAPDDRL PAAFDDDTEE SDKGVFKVWM HNNKHNFVGG HSARRSASAS 180 AATAIHHPFI DAAPVCPSSH AAPAPAAAVH LSAPAPAASP ATPVLADSNI NGNAADYFRV 240 QPSTASGGSP QSS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.78427	0.0	ear\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G438438

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G438438_P02

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039408	0.0	BT039408.1 Zea mays full-length cDNA clone ZM_BFc0012J06 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001146009.1	1e-78	ZF-HD homeobox protein
Swissprot	Q6ER21	4e-34	ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBL	B4FQM0	1e-180	B4FQM0_MAIZE; Uncharacterized protein
STRING	GRMZM2G438438_P01	5e-78	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69600.1	4e-21	zinc finger homeodomain 1

Link Out ? help Back to Top
Phytozome	GRMZM2G438438_P02