PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G446515_P06
Common NameLOC100192608
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family BES1
Protein Properties Length: 191aa    MW: 21119.8 Da    PI: 6.0546
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G446515_P06genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822124.51.3e-3846121176
             DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76 
                        g+s r++  +E+E++k RER+RRai+ +i+aGLR++Gny+l++raD+neV++AL+reAGwvv +DGtt++ +s+  
  GRMZM2G446515_P06  46 GTSNRRRAREEKERTKMRERQRRAITGRILAGLRQHGNYRLRARADINEVIAALAREAGWVVLPDGTTFPSSSSFA 121
                        57899*****************************************************************877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.0E-3548123IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MQQAGLADDD DEEIWVKEED DEEEEDGYYM DPRSPAVWTP GGRAGGTSNR RRAREEKERT  60
KMRERQRRAI TGRILAGLRQ HGNYRLRARA DINEVIAALA REAGWVVLPD GTTFPSSSSF  120
AAVAAQVALS LCLPAPSFPS ELVTSISIGK KGNGLSELAA LRCEMGREGE RRKRVSSQLS  180
VCIYCTVLMM S
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G446515
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G446515_P06
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9732410.0EU973241.1 Zea mays clone 395337 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001337631.17e-58uncharacterized protein LOC100278364
RefseqXP_023156259.17e-58uncharacterized protein LOC100278364 isoform X1
SwissprotO808313e-32BAM7_ARATH; Beta-amylase 7
TrEMBLA0A1D6I0991e-137A0A1D6I099_MAIZE; Beta-amylase 2 chloroplastic
STRINGGRMZM2G446515_P053e-57(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.18e-22beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]