PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G454449_P01
Common NameZEAMMB73_437672
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 253aa    MW: 28049.3 Da    PI: 8.4883
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G454449_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.96.4e-301871255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       pr+rWt+eLH++Fveave LGG+++AtPk+il+lm+ kg++++h+kSHLQ+YR 
  GRMZM2G454449_P01 18 PRMRWTEELHRQFVEAVECLGGQDEATPKRILQLMGAKGVSISHIKSHLQMYRA 71
                       8****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.1041474IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-281473IPR009057Homeodomain-like
SuperFamilySSF466892.33E-161874IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-231871IPR006447Myb domain, plants
PfamPF002496.5E-91970IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MRGFERKGVR QYNRSEVPRM RWTEELHRQF VEAVECLGGQ DEATPKRILQ LMGAKGVSIS  60
HIKSHLQMYR ASISSSSSTH HQPSLQKSTS TAASNNKRVF FTREDCASQE GNAPASDKNI  120
YTTTVRGCGQ YSSPYQIRPS LQQVFRCWEQ KRGRVAWNSD VLTTEKGVII RPSHTRKHET  180
QQHTGCDLTL SIGLWEDASS SDDADGSSSI SEELLPAPAA GGARRVAAVV KEEEESKPAA  240
LNLDLTISSS WLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-151972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-151972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-151972356Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-151972356Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G454449
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G454449_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560371e-136EU956037.1 Zea mays clone 1555999 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659894.11e-159probable transcription factor KAN4
TrEMBLA0A3L6DI471e-148A0A3L6DI47_MAIZE; Putative Myb family transcription factor
STRINGGRMZM2G454449_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54933758
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.12e-25G2-like family protein