PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G457562_P01
Common NameZEAMMB73_886436, Zm.32655
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 235aa    MW: 24189.3 Da    PI: 6.9694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G457562_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-201968255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                       +++GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  GRMZM2G457562_P01 19 RFRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 68
                       69*******.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.331976IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-221977IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-321977IPR001471AP2/ERF domain
CDDcd000186.81E-201978No hitNo description
PfamPF008473.4E-141968IPR001471AP2/ERF domain
SMARTSM003801.2E-361982IPR001471AP2/ERF domain
PRINTSPR003671.4E-112031IPR001471AP2/ERF domain
PRINTSPR003671.4E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0025142anatomyleaf tip
PO:0025541anatomybundle sheath cell
PO:0025589anatomyleaf lamina tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEGHYSPTAS AAEAGGERRF RGVRQRPWGK WAAEIRDPHK AARVWLGTFD TAEAAARAYD  60
EAALRFRGSR AKLNFPEDAR LTTAPSAAVA PAAAGSTTTM AVAASAGGSY QQEASAAVVS  120
ADYLQYQMML LQGATSGQGS SSHGGYPLYY DYGGHGGAGA GAGGGAMSSS YSFPASTVTV  180
ASVPSSSASS APSYGEAAQW AGSWPESSAW SYPATTASWS GSSQYEYPPS TRPPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-232076663ATERF1
3gcc_A3e-232076663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.326550.0ear| endosperm| meristem| ovary| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G457562
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G457562_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0393900.0BT039390.1 Zea mays full-length cDNA clone ZM_BFc0010H11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001143036.21e-163uncharacterized protein LOC100275504
TrEMBLA0A1D6FPM71e-159A0A1D6FPM7_MAIZE; Ethylene-responsive transcription factor ABR1
TrEMBLB4FQK21e-161B4FQK2_MAIZE; Ethylene-responsive transcription factor ABR1
TrEMBLK4JC971e-161K4JC97_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM2G457562_P011e-162(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62322649
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-22ethylene response factor 110