PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G459156_P01
Common NameZEAMMB73_081981
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 181aa    MW: 20503.8 Da    PI: 10.0385
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G459156_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.41.7e-33761811103
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp+GfrF+Ptdeelv +yLk+k++g+ +     i++vd+  +ePw+Lp k  +++++ ew+fF++ d+ky+ g+r+nr+t++gyWkatgkd+
  GRMZM2G459156_P01  76 LPVGFRFRPTDEELVLHYLKPKIAGRAHADLLLIPDVDLSACEPWELPaKaLIRSDDPEWFFFAPLDRKYPGGHRSNRSTAAGYWKATGKDR 167
                        79*************************888788***************5346667888********************************** PP

                NAM  91 evlsk.kgelvglk 103
                         + s+  g+l+g+k
  GRMZM2G459156_P01 168 LIRSRpAGTLIGVK 181
                        **998666667765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF143704.4E-20144IPR025834Topoisomerase I C-terminal domain
Gene3DG3DSA:1.10.132.102.0E-18145IPR014727DNA topoisomerase I, catalytic core, alpha/beta subdomain
SuperFamilySSF563494.32E-6744IPR011010DNA breaking-rejoining enzyme, catalytic core
SuperFamilySSF1019417.06E-3773181IPR003441NAC domain
PROSITE profilePS5100539.54676181IPR003441NAC domain
PfamPF023651.5E-1677171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006265Biological ProcessDNA topological change
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005694Cellular Componentchromosome
GO:0003677Molecular FunctionDNA binding
GO:0003917Molecular FunctionDNA topoisomerase type I activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEMNKKIKED LKAVALGTSK VNYFDSRITV AWCKRHEVPI EKVFFHGRII VDWWCQRAGE  60
GGTKVMQPPP QLPAALPVGF RFRPTDEELV LHYLKPKIAG RAHADLLLIP DVDLSACEPW  120
ELPAKALIRS DDPEWFFFAP LDRKYPGGHR SNRSTAAGYW KATGKDRLIR SRPAGTLIGV  180
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-29651816117NO APICAL MERISTEM PROTEIN
1ut4_B7e-29651816117NO APICAL MERISTEM PROTEIN
1ut7_A7e-29651816117NO APICAL MERISTEM PROTEIN
1ut7_B7e-29651816117NO APICAL MERISTEM PROTEIN
3swm_A7e-29651819120NAC domain-containing protein 19
3swm_B7e-29651819120NAC domain-containing protein 19
3swm_C7e-29651819120NAC domain-containing protein 19
3swm_D7e-29651819120NAC domain-containing protein 19
3swp_A7e-29651819120NAC domain-containing protein 19
3swp_B7e-29651819120NAC domain-containing protein 19
3swp_C7e-29651819120NAC domain-containing protein 19
3swp_D7e-29651819120NAC domain-containing protein 19
4dul_A7e-29651816117NAC domain-containing protein 19
4dul_B7e-29651816117NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.862210.0ear| endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G459156
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:18443413}.
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:18443413}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G459156_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0676350.0BT067635.1 Zea mays full-length cDNA clone ZM_BFc0101L24 mRNA, complete cds.
GenBankEU9532630.0EU953263.1 Zea mays clone 1394620 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169690.13e-79uncharacterized protein LOC100383571
RefseqXP_008658885.13e-79putative NAC domain transcription factor superfamily protein isoform X1
SwissprotF4JN353e-44NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A3L6DB165e-78A0A3L6DB16_MAIZE; Protein NTM1-like 9
STRINGGRMZM2G459156_P011e-132(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Representative plantOGRP1274945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.21e-44NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]