PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G459540_P01
Common NameLOC103645108
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 257aa    MW: 26926.7 Da    PI: 10.3247
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G459540_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-0585104221
                        EETTTTEEESSHHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                        +C+ Cgk+Fs++  L  H+r
  GRMZM2G459540_P01  85 PCSECGKRFSSWKALFGHMR 104
                        5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014475.49E-52328No hitNo description
PROSITE profilePS5015710.09784111IPR007087Zinc finger, C2H2
SMARTSM003550.00484106IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.1E-585109No hitNo description
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
PfamPF139128.8E-986108IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-586106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.1E-5175200IPR007087Zinc finger, C2H2
SMARTSM0035539175198IPR015880Zinc finger, C2H2-like
SuperFamilySSF1014475.49E-5197203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MATPIRPAAA APPAPARPPQ PMPPPPPPHH DTTLTLSLAL PPPPPPSPFA RARGVAPRPA  60
PRPPDVVVAR PAAVRSSPPA GGTPPCSECG KRFSSWKALF GHMRCHPERQ WRGMTPPPHF  120
WHQFTVQERE TATSLLMLRG DRPAGAAGSR GRKSTLGAAG TSASSSLPRC ECDDHKCSVC  180
VRGGFATGRA LGGHKRCHWE KTEGAPPAVA TCSGDGFSAS SSQAAPATTL DLNLPLLPRK  240
SDQDGSLDAT LDLKLGF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.929652e-43pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G459540
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G459540_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751886e-41EU975188.1 Zea mays clone 483820 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008666450.10.0zinc finger protein ZAT3
TrEMBLA0A1D6KHZ41e-179A0A1D6KHZ4_MAIZE; Zinc finger protein ZAT3
STRINGGRMZM2G459540_P011e-180(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.17e-25C2H2-like zinc finger protein