PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G469551_P02
Common NameLOC100192627
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HD-ZIP
Protein Properties Length: 648aa    MW: 71676.2 Da    PI: 6.8123
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G469551_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-182279457
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         ++t+eq+e+Le++++++++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  GRMZM2G469551_P02 22 YVRYTPEQVEALERVYAECPKPSSARRQQLLRECpilsNIEAKQIKVWFQNRRCRDKQ 79
                       6789***************************************************996 PP
2START157.98.2e-501583662205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g+++  +++ s++ +g a+ra+g+v  ++++ ve+l d++  W +++++ e++  +  g  g++
  GRMZM2G469551_P02 158 IAEETLTEFLSKATGTAIDWVQMPGMKPGPDSFGIVTISHGGRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVYTMLPAGngGTI 248
                        6899******************************************************9999999999.****************9999*** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++   + ++   ++++vRae+lpSg+l++++++g+s v +v+h dl+++++++
  GRMZM2G469551_P02 249 ELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGDGQSaatTQQFVRAEMLPSGYLVRQCEGGGSIVRIVDHLDLDAWSVPE 340
                        *****************************************98888877889**************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s+++ ++k+++ +l+++++
  GRMZM2G469551_P02 341 VLRPLYESSRVVAQKMTTTALRHLRQ 366
                        ********************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-19376IPR009057Homeodomain-like
PROSITE profilePS5007115.4181680IPR001356Homeobox domain
SMARTSM003894.6E-161884IPR001356Homeobox domain
CDDcd000863.02E-162181No hitNo description
SuperFamilySSF466891.58E-162182IPR009057Homeodomain-like
PfamPF000462.4E-162279IPR001356Homeobox domain
CDDcd146863.57E-673112No hitNo description
Gene3DG3DSA:1.20.5.1708.8E-477127No hitNo description
PROSITE profilePS5084826.441148376IPR002913START domain
CDDcd088751.44E-76152368No hitNo description
SuperFamilySSF559612.47E-34153370No hitNo description
Gene3DG3DSA:3.30.530.208.7E-21156343IPR023393START-like domain
SMARTSM002343.5E-36157367IPR002913START domain
PfamPF018521.2E-47158366IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MRSGSSDGGG GYEKSGMDTG KYVRYTPEQV EALERVYAEC PKPSSARRQQ LLRECPILSN  60
IEAKQIKVWF QNRRCRDKQR NESSRLQSVN RKLTAMNKLL MEENERLQKQ VSQLVHENAY  120
MKQQLQNPSL ATDASCESNA TTPANLRDAS NPSGLLAIAE ETLTEFLSKA TGTAIDWVQM  180
PGMKPGPDSF GIVTISHGGR GVAARACGLV NLEPTKIVEI LKDRPSWFRD CRSLEVYTML  240
PAGNGGTIEL VYMQMYAPTT LVPARDFWTL RYTTTMEDGS LVVCERSLSG SGDGQSAATT  300
QQFVRAEMLP SGYLVRQCEG GGSIVRIVDH LDLDAWSVPE VLRPLYESSR VVAQKMTTTA  360
LRHLRQIAQE TSGEVVYALG RQPAVLRTFS QRLSRGFNDA ISGFNDDGWS VMCGDGMEDV  420
IIACNSKKIR SSSNPATGFG APGPGGIICA KASMLLQSVP PAVLVRFLRE HRSEWADYNF  480
DAYSASALKT SPCSLPGLRP MRFSGSQIIM PLAHTVENEE ILEVVRLEGQ TLTHDEGLLS  540
RDIHLLQLCT GMDEKSMGSC FQLVFAPIDE LFPDDAPLVS SGFRVIPLDI KTVEYFLLVC  600
MFGIKFVPIP CLFLPPQRIK FLHVCYLNLT QTIPFPPCYG SMFSFLHA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1376890.0shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G469551
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G469551_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548030.0BT054803.1 Zea mays full-length cDNA clone ZM_BFb0066G08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001316502.10.0uncharacterized protein LOC100192627
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A1D6KSU30.0A0A1D6KSU3_MAIZE; Homeobox-leucine zipper protein REVOLUTA
STRINGGRMZM2G469551_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein