PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G469873_P01
Common NameLOC100382163, ZEAMMB73_488031
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 398aa    MW: 45440.4 Da    PI: 6.372
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G469873_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.92e-2184181185
           trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                        +Wt  +v++L+ a+++++e++ ++             +++++W+ vs++m ergf +sp+qC++k+++lnkryk+++e+ +++ +++ +++ 
  GRMZM2G469873_P01  84 KWTSGMVKLLVSAVSYIDEDVDADHgtssgrrkhavlKRMGKWKLVSSAMTERGFAVSPQQCEDKFNDLNKRYKRLTEILGRGrACQIVEKP 175
                        7**************999999987556678888999899******************************************99679999999 PP

           trihelix  80 pyfdql 85 
                         +++ql
  GRMZM2G469873_P01 176 ELLEQL 181
                        988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-1982207No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEGNLPPQTM VPGGGPFDLG QPFHFAVQPQ ALQVYQDVFA APAASQMPEL GNVVKASLSD  60
EEEGGDGHLD RGKAAAASQW HRVKWTSGMV KLLVSAVSYI DEDVDADHGT SSGRRKHAVL  120
KRMGKWKLVS SAMTERGFAV SPQQCEDKFN DLNKRYKRLT EILGRGRACQ IVEKPELLEQ  180
LSLSGKLREE AKKHLNSKHL HYEEMCSYHN RNRYCLLDDP VLQRSLRMAL RAPAEQGKQC  240
LFGYDDEDDQ MLLSDDDDDY EDDELNDDLE AGAEDHGPHR VHATEKLKHD HEGHCGSHLS  300
EVAAIDMNRM NFEGSGGPSS EKNLSYMRVQ IERQRLKIKS QMLRIEQRHF KWLKFSKEKD  360
RELQKMKLEN ERMALENERL ELELKLKEIE IGIKPKRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.851940.0embryo| endosperm| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G469873
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G469873_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0633740.0BT063374.1 Zea mays full-length cDNA clone ZM_BFc0058B03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168394.10.0uncharacterized protein LOC100382163
RefseqXP_008677548.10.0uncharacterized protein LOC100382163 isoform X1
TrEMBLC0P5050.0C0P505_MAIZE; Uncharacterized protein
STRINGGRMZM2G469873_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127742636
Representative plantOGRP1303645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-59sequence-specific DNA binding transcription factors