PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G472671_P01
Common NamebHLH145, LOC100273284
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 254aa    MW: 27321.9 Da    PI: 5.9714
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G472671_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-1391136454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +h e+Er+RRd++N +f eLr  +P+       +++Ka+ L  A  YI +L
  GRMZM2G472671_P01  91 SHVEAERQRRDKLNRRFCELRAAVPTV-----SRMDKASLLADAATYIGEL 136
                        799***********************6.....49**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.30187136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1689154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.37E-1390141No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1691153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1091136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-1293142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDELVCPAAS SCSSPSPTSF FAAGHVPELE FVSWDVPEEW MEGTDWFDEP LDGDEGSRSA  60
GNDLSGEPPA PAPKRRRGRK PGPRTNGPTL SHVEAERQRR DKLNRRFCEL RAAVPTVSRM  120
DKASLLADAA TYIGELRDRV EQLEAEAKQA SAAVTTAVAA ASHSFAPLQE KLGLEVRMVA  180
GLDAAALRLT TSAARHAPAH LMLALRSLDL QVQHACVCRV GGVTVQDAIV DVPAGLRDER  240
CLRAALLQRL QPSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-1990149766Transcription factor MYC2
5gnj_B6e-1990149766Transcription factor MYC2
5gnj_E6e-1990149766Transcription factor MYC2
5gnj_F6e-1990149766Transcription factor MYC2
5gnj_G6e-1990149766Transcription factor MYC2
5gnj_I6e-1990149766Transcription factor MYC2
5gnj_M6e-1990149766Transcription factor MYC2
5gnj_N6e-1990149766Transcription factor MYC2
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G472671
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G472671_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0406790.0BT040679.1 Zea mays full-length cDNA clone ZM_BFc0116D15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141197.10.0uncharacterized protein LOC100273284
TrEMBLA0A317Y4U60.0A0A317Y4U6_MAIZE; Transcription factor MYC2
TrEMBLB4FU910.0B4FU91_MAIZE; BHLH transcription factor
STRINGGRMZM2G472671_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Representative plantOGRP1735523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.16e-20bHLH family protein