PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G473152_P01
Common NameLOC103650792, Zm.133751
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YB
Protein Properties Length: 179aa    MW: 18913 Da    PI: 6.7363
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G473152_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.96.8e-5428123297
              NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                        +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++ a++ lGf+dyv+p++ yl+kyrel
  GRMZM2G473152_P01  28 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCCAFGALGFDDYVDPMRRYLHKYREL 119
                        89****************************************************************************************** PP

              NF-YB  94 egek 97 
                        eg++
  GRMZM2G473152_P01 120 EGDR 123
                        **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.0E-4924128IPR009072Histone-fold
SuperFamilySSF471137.9E-3830127IPR009072Histone-fold
PfamPF008081.2E-263396IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.9E-166179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.9E-168098No hitNo description
PRINTSPR006151.9E-1699117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MADHHHHHHH GHPPDGPGGA GDQLEVIKEQ DRLLPIANVG RIMKQILPPN AKISKEAKET  60
MQECVSEFIS FVTGEASDKC HKEKRKTVNG DDVCCAFGAL GFDDYVDPMR RYLHKYRELE  120
GDRAASSRGG GGGPAGAADP ASASAAAGPS PSAASAGHFM FGAAMDRPDN NSSAGARPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4327118192Transcription factor HapC (Eurofung)
4g92_B1e-4327118192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G473152
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G473152_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701980.0EU970198.1 Zea mays clone 342117 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008674580.11e-129nuclear transcription factor Y subunit B-1
SwissprotO822482e-57NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1D6N2421e-128A0A1D6N242_MAIZE; Nuclear transcription factor Y subunit B-4
TrEMBLA0A3L6FL701e-128A0A3L6FL70_MAIZE; Nuclear transcription factor Y subunit B-5
STRINGGRMZM2G473152_P011e-129(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.16e-55nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]