PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G475017_P02
Common NameZEAMMB73_788382, Zm.97988
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 374aa    MW: 41268 Da    PI: 8.9846
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G475017_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.8e-102141727
                       SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  7 rffartGtCkyGdrCkFaHgp 27
                       +++a++GtCk+G++CkF H++
  GRMZM2G475017_P02 21 QYYAKNGTCKFGSNCKFDHPR 41
                       59*****************96 PP
2zf-CCCH38.22.4e-126185327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       +++C+++++tG+Ck+G++CkF+H++
  GRMZM2G475017_P02 61 EKECSYYMKTGHCKFGGTCKFHHPE 85
                       689********************96 PP
3zf-CCCH40.25.6e-13213239127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C ++++tGtCkyG+ Ck++H++
  GRMZM2G475017_P02 213 PGQPECEHYMKTGTCKYGAACKYHHPQ 239
                        5789*********************97 PP
4zf-CCCH24.35.6e-08262285427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         +C ++a  G+Ck+G++CkF H++
  GRMZM2G475017_P02 262 QRCAYYAHHGFCKFGPTCKFDHPM 285
                        68********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.9011442IPR000571Zinc finger, CCCH-type
SMARTSM003560.291641IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-72141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-42242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8265886IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-55885IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-66085IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-106185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-46484IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859212240IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6212239IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-10214239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5216239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4218237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929258286IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-4258285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5260286IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5261285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MYYFFIVMWW KLWLRNSRYF QYYAKNGTCK FGSNCKFDHP RESGFVPVAL NNSGFPLRLG  60
EKECSYYMKT GHCKFGGTCK FHHPELGFLT ETPGMYPPVQ PSPISSPHPY PHHSNWQMGR  120
PAVVPGSFLP GPYPPMMLPP TVMPMQGWNP YVSPMNQTTP AGGQQAVPAG PSYGLSHQEP  180
TSAVTYGSHY AQLYSSSGTS SSNIQEYVFP ERPGQPECEH YMKTGTCKYG AACKYHHPQY  240
FSGPKSNCIL SPLGLPLRPG SQRCAYYAHH GFCKFGPTCK FDHPMGTPNY SLPAPSLTDV  300
PVAPYPHTFS VTPIAPYLLP PDPRPQYTLA KDPSAYPPQA PGTTYGPVGA ISKVYARHTL  360
IRSPTSGAAG MQAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.979880.0ear| meristem| ovary| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G475017
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G475017_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9668110.0EU966811.1 Zea mays clone 297536 zinc finger CCCH type domain-containing protein ZFN-like 3 mRNA, complete cds.
GenBankEU9682910.0EU968291.1 Zea mays clone 318354 zinc finger CCCH type domain-containing protein ZFN-like 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357554.10.0zinc finger CCCH type domain-containing protein ZFN-like 3
SwissprotQ5NAV31e-170C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLK7UP770.0K7UP77_MAIZE; Zinc finger CCCH domain-containing protein 58
STRINGGRMZM2G475017_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.34e-69C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]