PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G475017_P04
Common NameZEAMMB73_788382, Zm.97988
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 96aa    MW: 10164.2 Da    PI: 4.5318
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G475017_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.53.9e-124268127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ++++ C +++rtG C yG+rC+++H++
  GRMZM2G475017_P04 42 PGEADCTYYLRTGACGYGERCRYNHPR 68
                       57899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.6E-64168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3614169IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-104368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-74570IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-64769IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MEPYAATKGG ESDAGTGLEE SMRKLGLGED DEAGEEKLPE RPGEADCTYY LRTGACGYGE  60
RCRYNHPRDR PAPVSASLTH AASLSACSPT PALVLC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.979881e-110ear| meristem| ovary| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G475017
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G475017_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0840341e-120BT084034.2 Zea mays full-length cDNA clone ZM_BFb0066O16 mRNA, complete cds.
GenBankBT0840991e-120BT084099.2 Zea mays full-length cDNA clone ZM_BFb0074P05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357554.11e-44zinc finger CCCH type domain-containing protein ZFN-like 3
SwissprotQ84W916e-20C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1D6FBZ02e-43A0A1D6FBZ0_MAIZE; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A1D6FBZ46e-44A0A1D6FBZ4_MAIZE; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A1D6FBZ86e-44A0A1D6FBZ8_MAIZE; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A1D6FC051e-44A0A1D6FC05_MAIZE; Zinc finger CCCH domain-containing protein 58
TrEMBLK7V9901e-44K7V990_MAIZE; Zinc finger CCCH domain-containing protein 58
STRINGGRMZM2G475017_P014e-44(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.22e-16C3H family protein