PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G478396_P01
Common NameLOC732764, ZEAMMB73_513955, Zm.101387
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WOX
Protein Properties Length: 235aa    MW: 26471.7 Da    PI: 10.2422
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G478396_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.1e-201374157
                       TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++ R+++t+eq+++L elF+   r+ps++++++++++l    +++ ++V++WFqN++a+e++
  GRMZM2G478396_P01 13 KCGRWNPTPEQVKVLTELFRAgLRTPSTDQIQRISAHLgafgKVESKNVFYWFQNHKARERH 74
                       568*****************99**************************************95 PP
2Wus_type_Homeobox110.77.9e-361475364
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       + RW+PtpeQ+k+L+el+++GlrtP++++iqri+a+L ++Gk+e+kNVfyWFQN+kaRer++
  GRMZM2G478396_P01 14 CGRWNPTPEQVKVLTELFRAGLRTPSTDQIQRISAHLGAFGKVESKNVFYWFQNHKARERHH 75
                       78**********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003895.2E-51279IPR001356Homeobox domain
SuperFamilySSF466892.31E-121478IPR009057Homeodomain-like
PfamPF000469.5E-181474IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.1E-81673IPR009057Homeodomain-like
CDDcd000862.09E-41672No hitNo description
PROSITE profilePS500719.9932075IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDTEAPSGRV GVKCGRWNPT PEQVKVLTEL FRAGLRTPST DQIQRISAHL GAFGKVESKN  60
VFYWFQNHKA RERHHHKKKK RRRRGAAMAS SSSPDSGSGS GSSEEDGRVA AAADADLVLQ  120
PSPGRSKSKR EARRSYGGGH HRRLVTCKQL AHTHRYVRDV VEQQEEDTWE RPTREAVETL  180
ELFPLKSYVD LEAEKVRRYV VRAGASEQCR DFSFFDVSGG RDPPLLELRL CSFGP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17283RHHHKKKKRRRR
27681KKKKRR
37782KKKRRR
47783KKKRRRR
57883KKRRRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G478396
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During embryogenesis and crown root formation, it is expressed prior to the morphological differentiation of the root. {ECO:0000269|PubMed:12904206}.
UniprotTISSUE SPECIFICITY: Specifically expressed in the central cells of the quiescent center (QC) of the root. {ECO:0000269|PubMed:12904206}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269|PubMed:12904206}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G478396_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4902380.0AM490238.1 Zea mays mRNA for putative wuschel homeobox protein (wox5A gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008657043.11e-174WUSCHEL-related homeobox 9
SwissprotQ8W0F11e-97WOX9_ORYSJ; WUSCHEL-related homeobox 9
TrEMBLK7VNC31e-172K7VNC3_MAIZE; Putative homeobox DNA-binding domain superfamily protein
STRINGGRMZM2G478396_P011e-173(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94113643
Representative plantOGRP84061116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11260.17e-30WUSCHEL related homeobox 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Nardmann J,Werr W
    The shoot stem cell niche in angiosperms: expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution.
    Mol. Biol. Evol., 2006. 23(12): p. 2492-504
    [PMID:16987950]
  3. Li S, et al.
    OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development.
    New Phytol., 2014. 201(1): p. 66-79
    [PMID:24020752]
  4. Chu H, et al.
    A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice.
    J. Exp. Bot., 2013. 64(17): p. 5359-69
    [PMID:24043854]
  5. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  6. Coudert Y, et al.
    Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation.
    New Phytol., 2015. 206(1): p. 243-54
    [PMID:25442012]