PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G478501_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YB
Protein Properties Length: 200aa    MW: 22339.6 Da    PI: 4.1706
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G478501_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB154.61.7e-4813108297
              NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                        +eqdrflP+an++ im++++P+n+ki++da+e++qecvsefisf+tseasdkc +e+rktin +d++w+l+tlGfe+yveplk+yl++yre 
  GRMZM2G478501_P01  13 KEQDRFLPVANIGLIMRRAVPENGKIARDARESIQECVSEFISFITSEASDKCVKERRKTINDNDIIWSLGTLGFEEYVEPLKIYLNNYREE 104
                        89*****************************************************************************************9 PP

              NF-YB  94 egek 97 
                        ++ek
  GRMZM2G478501_P01 105 QKEK 108
                        8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.4E-4611112IPR009072Histone-fold
SuperFamilySSF471133.87E-3515109IPR009072Histone-fold
PfamPF008082.6E-231881IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.8E-184664No hitNo description
PROSITE patternPS0068504965IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.8E-186583No hitNo description
PRINTSPR006157.8E-1884102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MSEVEANTGG GGKEQDRFLP VANIGLIMRR AVPENGKIAR DARESIQECV SEFISFITSE  60
ASDKCVKERR KTINDNDIIW SLGTLGFEEY VEPLKIYLNN YREEQKEKPL RSGMDARLLH  120
QGNRASVEES GLRRLMMAGS NDDTIEVDGN EERWLCGLAK DDDEDDLWED ATKLFGLNTE  180
APIHVGGDQE GGGEEGVEDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B9e-4113103494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A9e-4113103494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G478501
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G478501_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0787423e-76KM078742.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398603.14e-64nuclear transcription factor Y subunit B-4
TrEMBLA0A1D6MLX83e-68A0A1D6MLX8_MAIZE; Nuclear transcription factor Y subunit B-8
STRINGGRMZM2G478501_P011e-144(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.69e-49nuclear factor Y, subunit B1