PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G480621_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YB
Protein Properties Length: 91aa    MW: 10394.6 Da    PI: 4.9124
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G480621_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB123.67.9e-391771793
              NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93
                       m++++ +n+ki++da+e++qecvsefisf+tseasdkc +e+rktin dd++w+l+tlGfe+yveplk+yl++y+e 
  GRMZM2G480621_P01  1 MRRAVTENGKIARDARESIQECVSEFISFITSEASDKCVKERRKTINDDDIIWSLGTLGFEEYVEPLKIYLNNYQEG 77
                       89************************************************************************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-35183IPR009072Histone-fold
SuperFamilySSF471136.04E-28185IPR009072Histone-fold
PfamPF008089.0E-19154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.8E-191937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.8E-193856No hitNo description
PRINTSPR006159.8E-195775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007101developmental stageLP.09 nine leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MRRAVTENGK IARDARESIQ ECVSEFISFI TSEASDKCVK ERRKTINDDD IIWSLGTLGF  60
EEYVEPLKIY LNNYQEGDIK GSKSSDQNGK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B1e-321761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-321761994NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G480621
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14617083}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G480621_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398603.11e-56nuclear transcription factor Y subunit B-4
SwissprotQ65XK19e-45NFYB4_ORYSJ; Nuclear transcription factor Y subunit B-4
TrEMBLA0A1D6DSP37e-60A0A1D6DSP3_MAIZE; Nuclear transcription factor Y subunit B-8
STRINGGRMZM2G480621_P011e-60(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.72e-42nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]