PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G481163_P01
Common NameLOC100273299, THX4
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 321aa    MW: 34106.4 Da    PI: 9.9574
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G481163_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.63.5e-2358147186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +Wt++e+laLiea+r+++e+lr+g+l++++W++v++++        +  ++s +qC++k+e+l+kry++++ ++ +r+++   ++p+f  l+
  GRMZM2G481163_P01  58 CWTHEETLALIEAYRDRWEALRKGNLRAADWDDVANAVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERSRSAGRSKG--PKWPFFPLLH 147
                        8*************************************99998888899**************************98443..47****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-2257148No hitNo description
PROSITE profilePS500906.07559121IPR017877Myb-like domain
SMARTSM005955.6E-566150IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSSSTSDAAR DDVVSSPDLP PLSAHVAAAA AAAAAAASSG GGIGLGGGGS GRRLPPPCWT  60
HEETLALIEA YRDRWEALRK GNLRAADWDD VANAVTARCG RFPTATHKSG VQCRHKIEKL  120
RKRYRAERSR SAGRSKGPKW PFFPLLHDLA GGGVPDPSPN AIVKIKTKGP APPASPPSPV  180
SSPSSSEEAV RSRSLHGLIS NGGAGSGLRF TIPKACRTKP AAAAAVKPER SGGEDDAESE  240
AMAEVAAALR SVGEGFLRME ERRLELSLQM EKERMESEMK RTQTMLDAQQ LFLEAFLGKQ  300
QQQQQHKKAR VSPSSAAMEE D
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.323790.0pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G481163
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G481163_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407270.0BT040727.1 Zea mays full-length cDNA clone ZM_BFc0120O10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141212.10.0uncharacterized LOC100273299
TrEMBLB4FUD90.0B4FUD9_MAIZE; FRIGIDA interacting protein 2
STRINGGRMZM2G481163_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Representative plantOGRP40591122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-27Trihelix family protein