PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G481668_P01
Common NameLOC103630375
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 186aa    MW: 19172.7 Da    PI: 9.3339
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G481668_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-151464155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++y+GVr++  +g+Wv+eIr+p +   r r +lg++  +e Aa a++aa+  l+g
  GRMZM2G481668_P01 14 CRYRGVRRRA-WGKWVSEIRVPGT---RERLWLGSYAAPEAAAVAHDAAACLLRG 64
                       78*****777.**********943...5**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-81464IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-161573IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-251573IPR001471AP2/ERF domain
SMARTSM003802.8E-241579IPR001471AP2/ERF domain
PROSITE profilePS5103220.561573IPR001471AP2/ERF domain
PRINTSPR003676.9E-81627IPR001471AP2/ERF domain
PRINTSPR003676.9E-83854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MSRAATNSGA ERRCRYRGVR RRAWGKWVSE IRVPGTRERL WLGSYAAPEA AAVAHDAAAC  60
LLRGCAGRRL NFPGRAACYY ACGGQQPLSP RSVQRVASDA GMAADAQIVD ARAALASPPP  120
VVQPAALAGI IGGAAREGGG GVRGPACAPA PPSNGAGSSS TYWSTPSSEP PLVYGDISVD  180
DIEILI
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G481668
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G481668_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2291992e-46AF229199.1 Oryza sativa chromosome 1 clone OSJNBa0048I01, complete sequence.
GenBankAP0033462e-46AP003346.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0434C04.
GenBankAP0033792e-46AP003379.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408G07.
GenBankAP0149572e-46AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-46CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649655.11e-128ethylene-responsive transcription factor ERF020
SwissprotQ9C9I85e-29ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A1D6M4K21e-126A0A1D6M4K2_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G481668_P011e-127(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.12e-15ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]