PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G522066_P01
Common NameZm.53685
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 121aa    MW: 14076.5 Da    PI: 11.4418
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G522066_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.3e-1514112199
                        EEEE-..-HHHHT.T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                 B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                        f++vl++ +v+ + ++l++   fa+eh +g   ++  l l+  + ++W v++ +  + +++   + W +Fv++n+L+   ++vF+l++  ++
  GRMZM2G522066_P01  14 FVTVLMKTHVGHKnSMLTVHHGFAAEHlEGR--SHEVLLLRPNREERWCVRYYHASHTRGFNC-RRWVKFVRENRLRKDHVCVFELIKGaTR 102
                        77888888887663778**********7544..333566666888*******65666666655.59*********************888** PP

                        E..EEEEE-S CS
                 B3  90 felvvkvfrk 99 
                        ++++v+v+rk
  GRMZM2G522066_P01 103 TTMLVHVLRK 112
                        *******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-187112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-177112IPR015300DNA-binding pseudobarrel domain
CDDcd100176.38E-1412111No hitNo description
SMARTSM010193.3E-1114113IPR003340B3 DNA binding domain
PfamPF023624.7E-1314112IPR003340B3 DNA binding domain
PROSITE profilePS5086310.15115113IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MRSLVSVQPG NPAFVTVLMK THVGHKNSML TVHHGFAAEH LEGRSHEVLL LRPNREERWC  60
VRYYHASHTR GFNCRRWVKF VRENRLRKDH VCVFELIKGA TRTTMLVHVL RKADGRLALV  120
A
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G522066
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G522066_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808341.11e-66B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT28e-50Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A1D6KEY84e-82A0A1D6KEY8_MAIZE; B3 domain-containing protein
STRINGGRMZM2G522066_P012e-84(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Representative plantOGRP6299819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.14e-08related to vernalization1 1