PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G531231_P01
Common NameZEAMMB73_830022
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 249aa    MW: 27198.9 Da    PI: 10.2617
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G531231_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.36.4e-263980142
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       krien +nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss
  GRMZM2G531231_P01 39 KRIENMTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSS 80
                       79**************************************97 PP
2SRF-TF91.44.6e-29178227150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                        krien++nrqvtfskRrng lKKA+ELSvLCdaeva+++fss+g lyey+
  GRMZM2G531231_P01 178 KRIENTTNRQVTFSKRRNGPLKKAYELSVLCDAEVALVVFSSRGCLYEYA 227
                        79***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-303190IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.9273180IPR002100Transcription factor, MADS-box
CDDcd002652.68E-303280No hitNo description
SuperFamilySSF554557.72E-243290IPR002100Transcription factor, MADS-box
PfamPF003193.9E-234080IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.651170230IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-37170229IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-27171230IPR002100Transcription factor, MADS-box
CDDcd002651.58E-36171229No hitNo description
PRINTSPR004046.5E-31172192IPR002100Transcription factor, MADS-box
PfamPF003191.3E-24179226IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-31192207IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-31207228IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MTIVTTDLSC GPSSKAKGGQ PAVTVSGGDR QGSSKIEIKR IENMTNRQVT FCKRRNGLLK  60
KAYELSVLCD AEVALVVFSS VAASTSTPTT GLYTRTSAVI SLGDSSSLAG LLLAQTWSSR  120
DWFGETKRER EREPRALEKN TFTKTDLSCG PSSKAKGGQP AVTVSGGDRQ GRGKIEIKRI  180
ENTTNRQVTF SKRRNGPLKK AYELSVLCDA EVALVVFSSR GCLYEYANNM PLRVRQQQVM  240
RNKFAAEDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A5e-1832227157Myocyte-specific enhancer factor 2A
3kov_B5e-1832227157Myocyte-specific enhancer factor 2A
3kov_I5e-1832227157Myocyte-specific enhancer factor 2A
3kov_J5e-1832227157Myocyte-specific enhancer factor 2A
3p57_A5e-1832227157Myocyte-specific enhancer factor 2A
3p57_B5e-1832227157Myocyte-specific enhancer factor 2A
3p57_C5e-1832227157Myocyte-specific enhancer factor 2A
3p57_D5e-1832227157Myocyte-specific enhancer factor 2A
3p57_I5e-1832227157Myocyte-specific enhancer factor 2A
3p57_J5e-1832227157Myocyte-specific enhancer factor 2A
5f28_C7e-1832227258MEF2C
5f28_D7e-1832227258MEF2C
6byy_A6e-1832227258MEF2 CHIMERA
6byy_B6e-1832227258MEF2 CHIMERA
6byy_C6e-1832227258MEF2 CHIMERA
6byy_D6e-1832227258MEF2 CHIMERA
6bz1_A7e-1832227258MEF2 CHIMERA
6bz1_B7e-1832227258MEF2 CHIMERA
6bz1_C7e-1832227258MEF2 CHIMERA
6bz1_D7e-1832227258MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1034341e-118ear| meristem| pericarp| pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G531231
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G531231_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX918841e-160X91884.1 Z.mays ZEMc gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020400119.12e-54uncharacterized protein LOC103639757
TrEMBLA0A1D6NUQ54e-63A0A1D6NUQ5_MAIZE; Agamous-like MADS-box AGL8-like protein
STRINGGRMZM2G531231_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.32e-32MIKC_MADS family protein