PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G582893_P01

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

NF-YA

Protein Properties

Length: 131aa MW: 14975 Da PI: 10.3644

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G582893_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	94.7	1.1e-29	54	110	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy+ Il+RRq Rak+e+e+kl k pylhe Rh+hAl+R+Rg gGrF GRMZM2G582893_P01 54 EEPVYVNAKQYNVILRRRQYRAKAESERKL-VKDVHPYLHEPRHQHALKRARGAGGRF 110 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	8.3E-32	52	113	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	32.635	53	113	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.6E-24	55	110	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.6E-20	56	78	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	58	78	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.6E-20	87	110	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MVPEAGPDCL PVSGPRASLK YVRRWRGPSG ETEIPRALVR MHMAGLPLPT DAIEEPVYVN 60 AKQYNVILRR RQYRAKAESE RKLVKDVHPY LHEPRHQHAL KRARGAGGRF LNSKSDDKEE 120 NSESSHKEKQ N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	8e-20	53	117	1	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.124260	1e-106	meristem\| root\| shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G582893

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G582893_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT066676	1e-104	BT066676.1 Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds.
GenBank	KJ728302	1e-104	KJ728302.1 Zea mays clone pUT6582 CCAAT-HAP2 transcription factor (CA2P12) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002443549.1	2e-52	nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	1e-32	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A317YDA6	5e-51	A0A317YDA6_MAIZE; Nuclear transcription factor Y subunit A-7
TrEMBL	C5YRY5	5e-51	C5YRY5_SORBI; Uncharacterized protein
STRING	GRMZM2G582893_P01	2e-92	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6555	38	53
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.1	1e-28	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	GRMZM2G582893_P01

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]