PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G700011_P01
Common NameLOC100274293, ZEAMMB73_465215
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 130aa    MW: 14004.7 Da    PI: 10.4209
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G700011_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.3e-09650546
                       -HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  5 TteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqk 46
                       ++e+  +l++a   + gg    +W++Ia+ ++ gRt++++++ w++
  GRMZM2G700011_P01  6 SPELSIRLARALISYAGGapesRWSLIANQLP-GRTGNDVRNCWNT 50
                       79999***************************.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.198156IPR017930Myb domain
PfamPF002495.8E-7650IPR001005SANT/Myb domain
CDDcd001673.25E-61352No hitNo description
Gene3DG3DSA:1.10.10.601.7E-121763IPR009057Homeodomain-like
SuperFamilySSF466891.79E-81861IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MRPASSPELS IRLARALISY AGGAPESRWS LIANQLPGRT GNDVRNCWNT KLSKQLRQRG  60
IDPTAPSPTS CTSSPAPSPY GDDGAGEIID ATLESWTATR RRGWTSSSPS CWPTRPTTLA  120
PPPRWAGSWA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G700011
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G700011_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9482990.0EU948299.1 Zea mays clone 372547 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658316.12e-86hypothetical protein
TrEMBLB4G0205e-79B4G020_MAIZE; MYB-related transcription factor
STRINGGRMZM2G700011_P028e-80(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.12e-11myb domain protein 103