PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G700011_P02
Common NameLOC100274293, MYBR72, ZEAMMB73_465215
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 162aa    MW: 17808 Da    PI: 9.3799
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G700011_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07782646
                       HHHHHHHHHHHHHTTTT....................................-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  6 teEdellvdavkqlGgg....................................tWktIartmgkgRtlkqcksrwqk 46
                       +e+  +l++a   + gg                                    +W++Ia+ ++ gRt++++++ w++
  GRMZM2G700011_P02  7 PELSIRLARALISYAGGapesraeevrqelqaevvrytnyhaliwatncvrvcRWSLIANQLP-GRTGNDVRNCWNT 82
                       677777777777777777777777777777777777777777777778888889*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.38E-84893IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-125695IPR009057Homeodomain-like
CDDcd001671.51E-56084No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MRPASSPELS IRLARALISY AGGAPESRAE EVRQELQAEV VRYTNYHALI WATNCVRVCR  60
WSLIANQLPG RTGNDVRNCW NTKLSKQLRQ RGIDPTAPSP TSCTSSPAPS PYGDDGAGEI  120
IDATLESWTA TRRRGWTSSS PSCWPTRPTT LAPPPRWAGS WA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G700011
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G700011_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0427080.0BT042708.1 Zea mays full-length cDNA clone ZM_BFc0017B12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142129.11e-113uncharacterized protein LOC100274293
TrEMBLB4G0201e-112B4G020_MAIZE; MYB-related transcription factor
STRINGGRMZM2G700011_P021e-113(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.13e-11myb domain protein 103