PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G701689_P01
Common Namepco123576
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CPP
Protein Properties Length: 772aa    MW: 83066.5 Da    PI: 7.3551
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G701689_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.81.4e-15460500242
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                        ++k+C+CkkskClk+YCeCfaag++Cse C+C +C+N++++
  GRMZM2G701689_P01 460 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCSCIGCMNNQSH 500
                        689**********************************9975 PP
2TCR51.32.4e-16545584140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN  
  GRMZM2G701689_P01 545 RHKRGCNCKKSSCLKKYCECFQGGVGCSISCRCEGCKNAF 584
                        589***********************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.9E-17459500IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.044460585IPR005172CRC domain
PfamPF036381.2E-11462497IPR005172CRC domain
SMARTSM011146.0E-17545586IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.7E-12547583IPR005172CRC domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MDTPDRPRAG AGAGFEDSPV FNFINNLSPI PPPKPLDSAH NVQLFKSSDL APVSSIFASP  60
HVNPTKGTKV LIRDESVQLP HELHSPSSVR TRIGTSGSFR MIRCKDIVPE NCNITCQLNE  120
ASIDSSDHTS SSTGQLTQSI KDAAGSMESD KDQCAGGKID LTMSQECTGL EGMNLDESSP  180
DRMDSSHSGI VVHENQLSEQ NNDEPAAYNG VYMITHQSSS DMLTLAVPSG TEAQPMNDTQ  240
KADNPYPCES LLDVQSSGNC TQNSVHEPHL YWNGAVEGAA VAYTPQALPG ALQSQLMPCN  300
KLNEPKDYMP TEQNALSQHL RGMRRRSLFN EKAGLSNKGV DKASDHHPVN STTPKCKTIS  360
GDNSKTLRTP PCALPGIGLH LNALAATATP KEKIVPQDIQ STINESSNLI GPAGSSPAPS  420
EQNIINDDFT QTTDVATAEA SSQGSPKKKR HKFDSGDGTS CKRCSCKKSK CLKLYCECFA  480
AGVYCSEPCS CIGCMNNQSH TETVLSTRQQ IESRNPLAFA PKVIHTSEPG LELRDFSNKT  540
PASARHKRGC NCKKSSCLKK YCECFQGGVG CSISCRCEGC KNAFGKREGA AVLSIEEPKQ  600
GLEEKDVCVK EEKSEIEKQL VVYQTPDDAP AENVLTTPSM VQCRPLACRP PPSSKKSSKK  660
PRSSTKLTGH PSRLCNLQAP PKTDTMLSPF ENYAEMVLGD STSDILKGNS SPQTSVKVVS  720
PNKKRISPLR MGTGLSPICR SGRKLILKSI PSFPSLGGDV NNEDPETKLP AP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1546458214120Protein lin-54 homolog
5fd3_B2e-1546458214120Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.849990.0aerial organ| cell culture| ear| embryo| endosperm| meristem| pericarp| pollen| sheath| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G701689
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G701689_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9722050.0EU972205.1 Zea mays clone 377413 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304301.10.0uncharacterized protein LOC100216775
TrEMBLA0A1D6MW770.0A0A1D6MW77_MAIZE; Protein tesmin/TSO1-like CXC 2
STRINGGRMZM2G701689_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127462630
Representative plantOGRP9931755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.18e-74Tesmin/TSO1-like CXC domain-containing protein