PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G803355_P01
Common NameLOC100285488
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 225aa    MW: 25246.7 Da    PI: 10.7761
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G803355_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161459147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg W + Ed++l ++v ++G+++W++Ia+ +  gR++k+c++rw++ 
  GRMZM5G803355_P01 14 RGHWRPGEDDKLRQLVDKYGPRNWNSIAESLE-GRSGKSCRLRWFNQ 59
                       899*****************************.***********996 PP
2Myb_DNA-binding51.32.7e-1666110147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r ++T  E+ell++a++ +G++ W+ I+r ++ gRt++ +k++w+ +
  GRMZM5G803355_P01  66 RRPFTVAEEELLLRAHRAHGNR-WAIISRLFP-GRTDNAVKNHWHVV 110
                        679*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.162960IPR017930Myb domain
SuperFamilySSF466893.67E-2913107IPR009057Homeodomain-like
SMARTSM007171.8E-131362IPR001005SANT/Myb domain
PfamPF002492.0E-161459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-251567IPR009057Homeodomain-like
CDDcd001673.15E-131758No hitNo description
PROSITE profilePS5129424.93361115IPR017930Myb domain
SMARTSM007175.0E-1565113IPR001005SANT/Myb domain
PfamPF002491.1E-1366109IPR001005SANT/Myb domain
CDDcd001671.31E-1168111No hitNo description
Gene3DG3DSA:1.10.10.601.3E-1968113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEKEKEKSRA RPSRGHWRPG EDDKLRQLVD KYGPRNWNSI AESLEGRSGK SCRLRWFNQL  60
DPRINRRPFT VAEEELLLRA HRAHGNRWAI ISRLFPGRTD NAVKNHWHVV MARRRRRTLV  120
GEAAAIGSVV VPPRHQYFHF GSCSPPPPTR SLCFAVPAGF GPLGLSRPAA SCGVRNCNVP  180
TAVALLDDGH RHDMSKDLGG DDDNGGDALA KRKDVQFFDF LGVGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-31141144104MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-31141144104C-Myb DNA-Binding Domain
1msf_C4e-31141144104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117RRRRRT
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G803355
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stamen (PubMed:19325888). Present in roots and siliques, and, at low levels, in leaves and flowers (PubMed:21399993). Expressed in stems, especially in fibers and, at lower levels, in xylems (PubMed:18952777, PubMed:21399993). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21399993}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G803355_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9724980.0EU972498.1 Zea mays clone 382267 myb-like DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151853.11e-166uncharacterized protein LOC100285488
SwissprotQ6R0C42e-57MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A3L6FJK21e-164A0A3L6FJK2_MAIZE; Transcription factor MYB105
TrEMBLB6U5I31e-164B6U5I3_MAIZE; Myb-like DNA-binding domain containing protein
STRINGGRMZM5G803355_P011e-165(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-58myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  4. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]