PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G803888_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 251aa    MW: 27691.9 Da    PI: 9.8088
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G803888_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.54.8e-31291422109
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdke 91 
                         pGfrFhPtdeelv++yL++kv+gk+l++ e+i+++diyk++PwdLpk +  ++ekewyfF+ r +ky+++ r+nr+t +g  +     d++
  GRMZM5G803888_P01  29 LPGFRFHPTDEELVTFYLRRKVAGKRLSI-EIIRDFDIYKHDPWDLPKsSSISGEKEWYFFCLRGRKYRNSIRPNRVTGTGSASgGHRIDRP 119
                        69***************************.89***************524445889*********************99997653455699* PP

                NAM  92 vlskkgel.....vglkktLvfy 109
                        v+s++++      vglkk+Lv  
  GRMZM5G803888_P01 120 VHSSGRARapvvvVGLKKSLVST 142
                        *9974433667779******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-3127140IPR003441NAC domain
PROSITE profilePS5100528.47328184IPR003441NAC domain
PfamPF023651.9E-1330140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MMAGGDHEEG EEVVLVVGDE EEEEEEDVLP GFRFHPTDEE LVTFYLRRKV AGKRLSIEII  60
RDFDIYKHDP WDLPKSSSIS GEKEWYFFCL RGRKYRNSIR PNRVTGTGSA SGGHRIDRPV  120
HSSGRARAPV VVVGLKKSLV STAAARQGHQ DGVDDARVSA SRRALTTPPT PRPPASERQR  180
VWDRLPGLQE ELHLQRNTPS SSSSSSRWLQ AAARCPPAPA RPPSRSPASR APSPAASNRT  240
PGTSTLIRSG E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-30191446123Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G803888
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G803888_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803594.13e-67transcription factor JUNGBRUNNEN 1-like
TrEMBLA0A2S3GVN78e-66A0A2S3GVN7_9POAL; Uncharacterized protein
TrEMBLA0A2T7EKN69e-66A0A2T7EKN6_9POAL; Uncharacterized protein
STRINGGRMZM5G803888_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-41NAC domain containing protein 42