PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G804893_P01
Common NameLOC542390
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YB
Protein Properties Length: 174aa    MW: 18417.5 Da    PI: 7.5019
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G804893_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.92.9e-5829125197
              NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                        vreqdrflPian+srimkk++Pan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplkvyl+kyre
  GRMZM5G804893_P01  29 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYRE 120
                        69****************************************************************************************** PP

              NF-YB  93 legek 97 
                        ++g++
  GRMZM5G804893_P01 121 VQGDS 125
                        **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.0E-5527135IPR009072Histone-fold
SuperFamilySSF471131.09E-4032133IPR009072Histone-fold
PfamPF008082.2E-283599IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-226381No hitNo description
PROSITE patternPS0068506682IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-2282100No hitNo description
PRINTSPR006151.1E-22101119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAEAPASPGG GGGSHESGSP RGGGGGGSVR EQDRFLPIAN ISRIMKKAIP ANGKIAKDAK  60
ETVQECVSEF ISFITSEASD KCQREKRKTI NGDDLLWAMA TLGFEDYIEP LKVYLQKYRE  120
VQGDSKLTAK SSDGSIKKDA LGHVGASSSA AQGGAYNQGM GYMQPQYHNG DISN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-5028120193NF-YB
4awl_B2e-5028120294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-5028120294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.972050.0cell culture| ear| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G804893
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G804893_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5574880.0FN557488.1 Zea mays mRNA for CAAT-box DNA binding protein, inbred line #6.
GenBankFN5574890.0FN557489.1 Zea mays mRNA for CAAT-box DNA binding protein, inbred line #10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020394782.11e-125nuclear transcription factor Y subunit B isoform X2
RefseqXP_020394783.11e-125nuclear transcription factor Y subunit B isoform X2
RefseqXP_020394784.11e-125nuclear transcription factor Y subunit B isoform X2
RefseqXP_020394785.11e-125nuclear transcription factor Y subunit B isoform X2
SwissprotP252091e-104NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A1D6M6541e-125A0A1D6M654_MAIZE; NF-YB-like protein
STRINGGRMZM5G804893_P021e-104(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.33e-68nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]
  2. Nelson DE, et al.
    Plant nuclear factor Y (NF-Y) B subunits confer drought tolerance and lead to improved corn yields on water-limited acres.
    Proc. Natl. Acad. Sci. U.S.A., 2007. 104(42): p. 16450-5
    [PMID:17923671]