PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G805387_P02
Common NameZEAMMB73_279785
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 152aa    MW: 17256.9 Da    PI: 10.3631
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G805387_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.7e-27959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krien++nrqvtfskRr+g+ KKA E+ vLCd+ev v+ifss gkly+y+s
  GRMZM5G805387_P02  9 KRIENSTNRQVTFSKRRAGLVKKAREIGVLCDTEVGVVIFSSGGKLYDYCS 59
                       79***********************************************96 PP
2K-box64.44.1e-2271143173
              K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 
                        yq++sgk l+ +k+++l+ e++++kke++n+q ++Rhl+GedL+sL+++eL  +e+ L+++ ++ R+k+  +l
  GRMZM5G805387_P02  71 YQTNSGKILWGEKHKNLSAEIDRVKKENDNMQIQLRHLKGEDLNSLQHRELIAIEEGLQNGQTNMREKQAVIL 143
                        89999999************************************************************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.258161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-32295IPR002100Transcription factor, MADS-box
CDDcd002652.21E-40280No hitNo description
PRINTSPR004043.2E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-1383143IPR002487Transcription factor, K-box
PROSITE profilePS512979.6884152IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MGRGKIKIKR IENSTNRQVT FSKRRAGLVK KAREIGVLCD TEVGVVIFSS GGKLYDYCSP  60
RTSLSRILEK YQTNSGKILW GEKHKNLSAE IDRVKKENDN MQIQLRHLKG EDLNSLQHRE  120
LIAIEEGLQN GQTNMREKQA VILTLPVAPE LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-20175173Myocyte-specific enhancer factor 2B
1tqe_Q5e-20175173Myocyte-specific enhancer factor 2B
1tqe_R5e-20175173Myocyte-specific enhancer factor 2B
1tqe_S5e-20175173Myocyte-specific enhancer factor 2B
6c9l_A5e-20175173Myocyte-specific enhancer factor 2B
6c9l_B5e-20175173Myocyte-specific enhancer factor 2B
6c9l_C5e-20175173Myocyte-specific enhancer factor 2B
6c9l_D5e-20175173Myocyte-specific enhancer factor 2B
6c9l_E5e-20175173Myocyte-specific enhancer factor 2B
6c9l_F5e-20175173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.3360.0ear| endosperm| ovary| pedicel| pericarp| pollen| shoot| silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G805387
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in lodicules and stamens from early to late stage of flower development. {ECO:0000269|PubMed:10945340, ECO:0000269|Ref.1}.
UniprotTISSUE SPECIFICITY: Highly expressed in anthers and carpels. Expressed in pollen, tapetum and stigma. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G805387_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0870130.0BT087013.1 Zea mays full-length cDNA clone ZM_BFb0323J02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656271.14e-98MADS-box transcription factor 4-like isoform X1
SwissprotQ407021e-81MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLC4J8661e-107C4J866_MAIZE; Uncharacterized protein
STRINGGRMZM5G805387_P032e-96(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-60MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]