PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G805685_P01
Common NameLOC100501773, ZEAMMB73_048292, Zm.33542
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family B3
Protein Properties Length: 280aa    MW: 30793.3 Da    PI: 8.0274
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G805685_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B391.37.5e-2941133186
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k ltpsdv+k++rlv+pk++ae+h       g+ +e++  l + de gr W+++++y+ +s++yvltkGW+++vk+++L++gD+v F ++
  GRMZM5G805685_P01  41 FEKPLTPSDVGKLNRLVIPKQHAERHfplgggdGNGNEKGLLLEFDDEAGRPWRFRYSYWVSSQSYVLTKGWSRYVKEKRLDAGDVVRFDRV 132
                        99******************************955556888************************************************966 PP

                        S CS
                 B3  86 g 86 
                        +
  GRMZM5G805685_P01 133 R 133
                        4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-3833159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-2738134IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-2639137No hitNo description
PfamPF023626.2E-2641133IPR003340B3 DNA binding domain
SMARTSM010195.9E-1941151IPR003340B3 DNA binding domain
PROSITE profilePS5086313.28141150IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MATHHLAQGH PQAWPWGMAM YTNLHYHHHQ QQQYYEREHL FEKPLTPSDV GKLNRLVIPK  60
QHAERHFPLG GGDGNGNEKG LLLEFDDEAG RPWRFRYSYW VSSQSYVLTK GWSRYVKEKR  120
LDAGDVVRFD RVRGAGVGAA DRLFICCRRR GESAAAASAA ATPTPPPVAP ALNAGEQQQQ  180
QPWSPTVCYS TSGSSYPPSP ASPYAYHIDT PHAGAGEADA KSSGGTPTTG TAPTRKLRLF  240
GVNLDCGPEP ETETPTAPMY GYGYVHQSPY AAVPAVPSYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-49361503113B3 domain-containing transcription factor NGA1
5os9_B3e-49361503113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.335420.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G805685
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G805685_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0861900.0BT086190.1 Zea mays full-length cDNA clone ZM_BFc0127O14 mRNA, complete cds.
GenBankJX4699900.0JX469990.1 Zea mays subsp. mays clone UT3350 ABI3VP1-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183364.10.0B3 domain-containing protein
SwissprotQ53QI01e-103Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLC4J5U30.0C4J5U3_MAIZE; B3 domain-containing protein
TrEMBLK4JRW70.0K4JRW7_MAIZE; ABI3VP1-type transcription factor (Fragment)
STRINGGRMZM5G805685_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.22e-46B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]