PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G809663_P01
Common NameCADR9
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YB
Protein Properties Length: 105aa    MW: 11914.5 Da    PI: 4.9234
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G809663_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1055.2e-331392293
              NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93
                       +eqdrflP+an++rim++++ +n+ki++da+e++q            easdkc +e+rktin dd++w+l+tlGfe+yveplk+yl++yre 
  GRMZM5G809663_P01 13 KEQDRFLPVANIGRIMRRAVLENGKIARDARESIQ------------EASDKCVKERRKTINDDDIIWSLGTLGFEEYVEPLKIYLNNYREQ 92
                       89*******************************98............69*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.0E-281192IPR009072Histone-fold
SuperFamilySSF471132.0E-241592IPR009072Histone-fold
PfamPF008085.6E-101869IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-85371No hitNo description
PRINTSPR006151.7E-87290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MSEVEANAGG GGKEQDRFLP VANIGRIMRR AVLENGKIAR DARESIQEAS DKCVKERRKT  60
INDDDIIWSL GTLGFEEYVE PLKIYLNNYR EQYGYLLSIA VQYGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A6e-291391393NF-YB
4awl_B6e-291391494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A6e-291391494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G809663
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14617083}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G809663_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020400222.16e-54nuclear transcription factor Y subunit B-4
SwissprotQ65XK17e-41NFYB4_ORYSJ; Nuclear transcription factor Y subunit B-4
TrEMBLA0A3L6DT262e-54A0A3L6DT26_MAIZE; Nuclear transcription factor Y subunit B-4
STRINGGRMZM5G809663_P014e-71(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.63e-37nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]