PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G812272_P01
Common NameLOC100279449, ZEAMMB73_267137
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 201aa    MW: 21195.2 Da    PI: 8.3211
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G812272_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.41.5e-185432159
                       -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                        rsYYrCt+++Cpvkk+vers++dp vv++tYeg+H+h+
  GRMZM5G812272_P01  5 CRSYYRCTTQRCPVKKRVERSHQDPAVVITTYEGKHTHP 43
                       6*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-17545IPR003657WRKY domain
SuperFamilySSF1182906.15E-15545IPR003657WRKY domain
PfamPF031062.2E-13543IPR003657WRKY domain
SMARTSM007741.5E-9644IPR003657WRKY domain
PROSITE profilePS5081118.946645IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MVMACRSYYR CTTQRCPVKK RVERSHQDPA VVITTYEGKH THPIPSTLRG SSTHLLAAQL  60
HHHHHHNIVG AFPPPPPPPQ TMCLPFVGRT GDGGGVIDML GLCLPPRNHA AVPPAATGLA  120
PSPCCMSGPV GTVAGATTTT APTTTTVTTT TTSSPPPPPS LQTMQHFMAQ DDFGLLQDML  180
PSSSSSLSFV VHSNGSNVQL P
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G812272
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G812272_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542540.0BT054254.1 Zea mays full-length cDNA clone ZM_BFb0200C23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341332.11e-140uncharacterized protein LOC100279449
TrEMBLA0A3L6DM971e-139A0A3L6DM97_MAIZE; Putative WRKY transcription factor 28
TrEMBLB7ZY621e-141B7ZY62_MAIZE; Uncharacterized protein
TrEMBLK7V4741e-139K7V474_MAIZE; Putative WRKY transcription factor 71
STRINGGRMZM5G812272_P021e-139(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.14e-23WRKY DNA-binding protein 71