PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G814279_P01
Common NameMADS74, ZEAMMB73_640015
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 183aa    MW: 20811.6 Da    PI: 9.8564
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G814279_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.83.8e-251059251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       rie+   rqvtfskRr g++KKAeEL vLCda+va+++fs tg+l  ++s
  GRMZM5G814279_P01 10 RIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSATGRLSQFAS 59
                       8*********************************************9986 PP
2K-box50.96.6e-18901701797
              K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         q +++ L++++ +  + +R++ GedLe Ls++eL+++e++Le +l ++ s+K++l+++qi el +k  +l++en++L+++
  GRMZM5G814279_P01  90 EQSKYSGLNEQLAEETNGLRQMRGEDLEGLSVEELHRMERKLEAGLHRVISTKDQLFMQQIGELLQKGTQLEDENRRLKEQ 170
                        4555555666666666889***********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.754161IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-28375IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-23323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-233859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.48687178IPR002487Transcription factor, K-box
PfamPF014869.7E-1791170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MARERREIRR IESAAARQVT FSKRRRGLFK KAEELAVLCD ADVALVVFSA TGRLSQFASS  60
SVNDIVDKYS THSKNLGKSH QQPSIDLNVE QSKYSGLNEQ LAEETNGLRQ MRGEDLEGLS  120
VEELHRMERK LEAGLHRVIS TKDQLFMQQI GELLQKGTQL EDENRRLKEQ KISSLKTGSR  180
LNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18173173MEF2C
5f28_B4e-18173173MEF2C
5f28_C4e-18173173MEF2C
5f28_D4e-18173173MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.148270.0cell lignification| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G814279
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the L1 cell layer of the embryo 2 days after pollination. {ECO:0000269|PubMed:15682279}.
UniprotTISSUE SPECIFICITY: Expressed in palea and stamen primordia. {ECO:0000269|PubMed:15682279}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G814279_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0415850.0BT041585.1 Zea mays full-length cDNA clone ZM_BFb0012I22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001333749.11e-112MADS-box transcription factor 55
SwissprotQ9XJ662e-85MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLB4FWU71e-128B4FWU7_MAIZE; MADS transcription factor
STRINGGRMZM5G814279_P011e-129(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-43MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]