PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G817854_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 227aa    MW: 25582.7 Da    PI: 7.8457
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G817854_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.2e-08168208954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+ri ++   L++l+P       +K++ a++L +A++YIk L
  GRMZM5G817854_P01 168 ARHRRERISERVRVLQRLVPGG-----TKMDTASMLDEAIRYIKFL 208
                        699*****************87.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.79E-10150213No hitNo description
PROSITE profilePS5088815.301159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-14164217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-13165217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-14165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-6169208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MNNITQHNSS SSWDLDMSLG THHHPLLFDS HPNPGPPPPP PLSFHLSSSS HHPPAPHPAH  60
HHPSLGPSLS SSLFPQPPHH HHHRLHRLGL DIDDPSSHSH GHRGNDELEE MRKQHEAAAE  120
HVDEELGAMK EMMYRIAAMQ PVDIDPATVK KPRRRNVRIS EDPQSVAARH RRERISERVR  180
VLQRLVPGGT KMDTASMLDE AIRYIKFLKR QVQELHSAGG QSSHGMH
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G817854
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G817854_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269700.0KJ726970.1 Zea mays clone pUT3671 bHLH transcription factor (bHLH85) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020408113.11e-102transcription factor IND
TrEMBLA0A3L6EYW71e-102A0A3L6EYW7_MAIZE; Transcription factor HEC3
STRINGGRMZM5G817854_P011e-161(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.13e-43bHLH family protein