PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G818655_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 528aa    MW: 56690.9 Da    PI: 7.8069
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G818655_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.33.1e-21119226186
           trihelix   1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                        +Wt+ +v++Li+++ +++++ +  +                     +kk++W++vs +m+++gf +sp+qC++k+++lnkryk++ +  +++
  GRMZM5G818655_P01 119 KWTDAMVRLLIRVVYSVGDDGEGVAtaggaggaakagpghaaaaqqQKKGKWKSVSHAMMDKGFVVSPQQCEDKFNDLNKRYKRVVDLLGRG 210
                        7************997777776432234556666677777777777*******************************************999 PP

           trihelix  72 .tsessstcpyfdqle 86 
                         +++++++++++d ++
  GRMZM5G818655_P01 211 rACRVVENHALLDAID 226
                        67*******9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.4E-18117252No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MAPRGGVVGS GAMLGLDMHL AQQRMHQAAA FQHQQDSHNG GFQLQQPSPV AVRQQQPPPS  60
SFMPYSTNTS SSRVVVSAAA VGHDDEMVGN GGGGKGGVVV QQQQQQQLAS AGCPWTRMKW  120
TDAMVRLLIR VVYSVGDDGE GVATAGGAGG AAKAGPGHAA AAQQQKKGKW KSVSHAMMDK  180
GFVVSPQQCE DKFNDLNKRY KRVVDLLGRG RACRVVENHA LLDAIDELTP KAKNEARKLL  240
SSKHLFFREM CAYHNSIAAA GSNLPPHGGG GAAGDTACLH HPPPAPVAAA ASSAARYAHA  300
QQHAAPSPQG MKDSSTDVAD DSDDAMSDNG DEDEDEEEED GPVYRSRRPR SRQHSGGRGK  360
RGRGMDGAAS EDLEDEADGG GGRRSRTAAA PDPSAILRQL KSELAAATAA AMDPQQARSW  420
VRRRAVEVEE QQIVLESHAY YLERQRLKWE RFRASKERDM ERSRLQNDRL RIESRRLLLM  480
LRHKDVDLDM AEANSSSVDH HTGASPLAAH QQQPIGSSPS PSTAGHPN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.272401e-132cell culture| meristem| ovary| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G818655
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G818655_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2890282e-88AK289028.1 Oryza sativa Japonica Group cDNA, clone: J090090M16, full insert sequence.
GenBankAP0034142e-88AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04.
GenBankAP0039212e-88AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04.
GenBankAP0149572e-88AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673999.10.0uncharacterized protein LOC103650125
TrEMBLA0A1D6MS660.0A0A1D6MS66_MAIZE; Sequence-specific DNA binding transcription factor
STRINGGRMZM5G818655_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Representative plantOGRP1284445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.18e-50sequence-specific DNA binding transcription factors