PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G821755_P01
Common Nameumc1102
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ZF-HD
Protein Properties Length: 331aa    MW: 35115.5 Da    PI: 8.4459
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G821755_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.74.9e-3271124357
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                        +vrY+eClkNhAa++Gg a+DGCgEfmp+ geeg+ +al+C+ACgCHRnFHR+e+
  GRMZM5G821755_P01  71 GVRYRECLKNHAAAIGGSATDGCGEFMPA-GEEGSLDALRCSACGCHRNFHRKEP 124
                        69**************************9.999********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.2E-2972124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-2273123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.9E-3073123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.68274123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.5E-29205276IPR009057Homeodomain-like
SuperFamilySSF466893.12E-19209276IPR009057Homeodomain-like
TIGRFAMsTIGR015658.5E-27215271IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDLSGTQGEL PMATMHAGGS PYLGLHHGHP QQHNHGANGR HMSPPDVVAE EAKNRQLAVV  60
PVGTGGGGGA GVRYRECLKN HAAAIGGSAT DGCGEFMPAG EEGSLDALRC SACGCHRNFH  120
RKEPPGGDGR QLYGHHHHHP LSPLAAVHPH HHRGLLVAAL PPAPTRMVMP LSAAMHHHQQ  180
PPQQHHSSAS ADSDDAHVPG VRGGEVQQQQ QAPARKRFRT KFTAEQKARM LGFAEDAGWR  240
LQKLDEAAVQ RFCQEVGVKR RVLKVWMHNN KHTLARRGHA GLPGDPELLG PHDGQLGMPL  300
PEPAAEPAAA AAAAAGLGVT DQAMSFGTGR H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-232162731875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.213420.0ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G821755
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G821755_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0432580.0BT043258.1 Zea mays full-length cDNA clone ZM_BFc0135C02 mRNA, complete cds.
GenBankBT0650050.0BT065005.1 Zea mays full-length cDNA clone ZM_BFc0120L10 mRNA, complete cds.
GenBankBT0655690.0BT065569.1 Zea mays full-length cDNA clone ZM_BFb0298N18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001144285.10.0uncharacterized protein LOC100277167
RefseqXP_020405218.10.0uncharacterized LOC100277167 isoform X1
RefseqXP_020405219.10.0uncharacterized LOC100277167 isoform X1
SwissprotQ2QW442e-76ZHD3_ORYSJ; Zinc-finger homeodomain protein 3
TrEMBLA0A1D6MY510.0A0A1D6MY51_MAIZE; Zinc-finger homeodomain protein 4
STRINGGRMZM5G821755_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.23e-54homeobox protein 31
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]