PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G829408_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family E2F/DP
Protein Properties Length: 548aa    MW: 60523.9 Da    PI: 8.0636
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G829408_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.88.7e-24370434171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        r+++sL+llt+ fl+ll+ ++ giv+ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwkg
  GRMZM5G829408_P01 370 RYDSSLGLLTK-FLNLLKGAPGGIVDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNNIRWKG 434
                        6799****985.8*********************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542113.8E-92139IPR020568Ribosomal protein S5 domain 2-type fold
Gene3DG3DSA:1.10.10.106.7E-25368436IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.1E-32370434IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-20372434IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.8E-14372432IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:2.130.10.103.1E-8470542IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509788.79E-7493541IPR017986WD40-repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MEGGSRADGQ NPNQLRLFTC IGNLLHRAHG CTRWAQGGIV MLSAVYGPKP GTVRGRTPEK  60
ASIEAVWKPR TGQIDTPLFP SSSFCPTAVR VIGSLKWRVV FAGRQEREYE MTLKRMLQSI  120
CLLTVHANTT TSVVLQNLSV ERFACITETE EKNCHKTSTF TYFPTDMQDA QGSLDRRDVF  180
SLDTHSPSVC LLIQLEKAAT EEGGVTPSVY SHKEPVHLAE KEKQKLQVWS RIMPCKESFA  240
WAMIPLFEGN HAGGLSDAAH KYYISNLFQS ITRYHLHVTP YLALILTRTF LLQLKRKHND  300
RTENEAAESN DWMSPGYANA GSSPVPTPPS GKGLKASTKP KATKGQKSGP ETPLGFGSPG  360
NLSTPVGGCR YDSSLGLLTK FLNLLKGAPG GIVDLNNAAE TLEVQKRRIY DITNVLEGIG  420
LIEKKLKNNI RWKGVDDSRP EEVSDDMSIL QADIDALTLQ ERNLDERIRI FSVCYTFSGR  480
FDPAEIPTTI GGLVATVSDN VVSILDVERQ AFARRFESHT KGVDSVCWDP TGEYVVSVSE  540
DTMKKNIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hkm_A4e-4351364107Os03g0854200 protein
3hkm_B4e-4351364107Os03g0854200 protein
3hkm_C4e-4351364107Os03g0854200 protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.538020.0cell lignification| ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G829408
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G829408_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9655380.0EU965538.1 Zea mays clone 286746 transcription factor E2F2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1D6M7Z10.0A0A1D6M7Z1_MAIZE; Exosome complex exonuclease RRP46-like protein
STRINGGRMZM5G829408_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.17e-37E2F transcription factor 3