PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G847287_P01
Common NameLOC103647589
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 247aa    MW: 27890.9 Da    PI: 4.7192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G847287_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.7e-09109172147
                        TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 
                        r+ WT+e+ e lv+a  ++ ++            W  Ia+t +       +Rt+kq+k++w +y
  GRMZM5G847287_P01 109 RLEWTKEDGENLVNAWFMHSNDpisgnnksgssFWGQIAATYNstsdpiRHRTAKQLKDHWVTY 172
                        789**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.528104173IPR017877Myb-like domain
SuperFamilySSF466897.9E-6106178IPR009057Homeodomain-like
SMARTSM007170.0013108175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-6108174IPR009057Homeodomain-like
CDDcd001670.00637111172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSGWSPYLNT FTDLLQSDGS PTTLPLDESS SLHRRSDVSA SLPRALFPVC AFTTIPLSLS  60
FVSISTVFIW STSNFPSRNS SLIPVAPLSV GSENQAEENP VPKEKRPKRL EWTKEDGENL  120
VNAWFMHSND PISGNNKSGS SFWGQIAATY NSTSDPIRHR TAKQLKDHWV TYNRENLWGG  180
LVKAKLLKQR NILKGRSTRD MDPAERRTHG RAVKMVEKEL GLLDDEEEEP EAEREEEEDE  240
DEIEESD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1037881e-115endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G847287
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G847287_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417807e-96BT041780.1 Zea mays full-length cDNA clone ZM_BFb0053P10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020404115.19e-61extensin
TrEMBLA0A1D6ENV06e-79A0A1D6ENV0_MAIZE; Uncharacterized protein
TrEMBLA0A3L6EG224e-76A0A3L6EG22_MAIZE; Phosphatidylinositol 4-kinase gamma 7
STRINGGRMZM5G847287_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3263337