PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G850092_P01
Common NameLOC100857060, ZEAMMB73_625945, Zm.79700
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 292aa    MW: 32915.1 Da    PI: 8.1133
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G850092_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.73.7e-1920106286
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                        W++ e+++Li+a++e++++lrrg+lk+++Weev+  +             +++ +qC++k+e+l+kry+ + ++         s +pyf+++
  GRMZM5G850092_P01  20 WSHVETMHLIDAYEERWTALRRGQLKAHQWEEVATEVaarcaanpGVIAQRKTGTQCRHKLEKLRKRYRTEGARPVT------SLWPYFRRM 105
                        *************************************999997655555578*****************98877764......68******* PP

           trihelix  86 e 86 
                        +
  GRMZM5G850092_P01 106 D 106
                        8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.3E-2018108No hitNo description
SMARTSM005957.8E-627113IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MADEPPPPAL ARKSAPAQPW SHVETMHLID AYEERWTALR RGQLKAHQWE EVATEVAARC  60
AANPGVIAQR KTGTQCRHKL EKLRKRYRTE GARPVTSLWP YFRRMDRLER GALAAYPAAA  120
SSPPAADGDE EEDEEDVQEE EEVEELVPRN NTRSINGIIR EFGTGLAPRH PQLQLHPPPS  180
SITPSTAPPR KRVAYEAFQA KDEAVAVEMT RRGGSGWAVA QLSVVVRDFG EGVMRLERRR  240
MEVQWEIERG WQEADARHAR MLKDALRQFR DTAAAAACVL PPKKARRDHG DS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.797000.0endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G850092
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G850092_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8586670.0HQ858667.1 Zea mays clone UT1103 Trihelix transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679510.10.0trihelix transcription factor ASIL1
TrEMBLF1DJQ90.0F1DJQ9_MAIZE; Homeodomain-like superfamily protein (Fragment)
STRINGGRMZM5G850092_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Representative plantOGRP1302445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.12e-24Trihelix family protein