PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G853836_P02
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 153aa    MW: 16640.7 Da    PI: 7.6436
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G853836_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA453.6e-1421443558
          CBFB_NFYA 35 rkpylheSRhkhAlrRpRgsgGrF 58
                        +pylheSRh+hAlrRpRgsgGrF
  GRMZM5G853836_P02 21 MQPYLHESRHQHALRRPRGSGGRF 44
                       69*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.8E-4147IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.802147IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.2E-112244IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MPCNISSVVF YRYIHVTAFM MQPYLHESRH QHALRRPRGS GGRFLNTKKE SSGKDAGGGS  60
KAMFSNPLMR QVASPSSEIQ QSDLGNPSSV SSLSGSEVSS MYDHEDAGHC HGLDHPFFTR  120
LPSIMDGGEH GVIVGNPFKW AAASEVCCDL LKA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.216830.0embryo| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G853836
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G853836_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0338110.0BT033811.1 Zea mays full-length cDNA clone ZM_BFc0155E11 mRNA, complete cds.
GenBankBT0678270.0BT067827.1 Zea mays full-length cDNA clone ZM_BFc0168D11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020404978.14e-91uncharacterized protein LOC100191652 isoform X1
RefseqXP_020404994.14e-91uncharacterized protein LOC100191652 isoform X1
RefseqXP_020405010.14e-91uncharacterized protein LOC100191652 isoform X1
TrEMBLB4F9M39e-90B4F9M3_MAIZE; Nuclear transcription factor Y subunit A-10
TrEMBLB4FXN49e-90B4FXN4_MAIZE; Uncharacterized protein
STRINGGRMZM5G853836_P021e-111(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Representative plantOGRP51361122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.41e-10nuclear factor Y, subunit A8