PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G863198_P01
Common NameLOC103628565
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 205aa    MW: 21436.1 Da    PI: 10.9184
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G863198_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.69.1e-082783653
                       HHHHHHHHHHHHHHHHHHHCTSCC.C..........TTS-.STCHHHHHHHHHHHHH CS
                HLH  6 nerErrRRdriNsafeeLrellPk.as.......kapskK.lsKaeiLekAveYIks 53
                       + +Er+RR+++N  +++L +l+   +s        ++++  ++  + Le+A  YI++
  GRMZM5G863198_P01 27 KTVERNRRNQMNALYSRLDTLVRAgSSpssaaapVQRGPPaMTRPDRLEEAAAYIRQ 83
                       679*********************766******97777777**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.7272184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.04E-723105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-824104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-52783IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEMPPPPPPP PFGGPAAAAG GSKLDRKTVE RNRRNQMNAL YSRLDTLVRA GSSPSSAAAP  60
VQRGPPAMTR PDRLEEAAAY IRQTTERVER LKERKRELVA SARASSSSQG SRSGSGSSSA  120
GAAEVEVQHL GSGLHAILVT TGAPPSEGAP FHRAVRAVEE AGGEVQNAHF SVVGARAIYT  180
IHALVAEGGI ERVVHRLKAA LRGDA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G863198
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G863198_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008646963.11e-142transcription factor bHLH162
TrEMBLA0A1D6H6F71e-141A0A1D6H6F7_MAIZE; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGGRMZM5G863198_P011e-142(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Representative plantOGRP1445944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-11bHLH family protein