PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G863420_P01
Common NameLOC103630663, WRKY82, Zm.127256
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 221aa    MW: 22963.4 Da    PI: 7.2114
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G863420_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.5e-31134192159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v++tYeg Hnh 
  GRMZM5G863420_P01 134 LDDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDKDDPSYVVTTYEGMHNHV 192
                        59********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-33120194IPR003657WRKY domain
SuperFamilySSF1182902.75E-28126194IPR003657WRKY domain
PROSITE profilePS5081131.686129194IPR003657WRKY domain
SMARTSM007741.2E-35134193IPR003657WRKY domain
PfamPF031061.1E-24135191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0007101developmental stageLP.09 nine leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAAVGAHPVL YHHPAPAGDA SSMSSYFSHG GSSTTSSSAS SFTAALAPTT TALAEHFDIS  60
EFLFDDAAGA GVAGAPGVFA DGAARPVVLP VPDAAGGGAI IGAAAGGAAA ASEVPERPRT  120
TRIAFRTRSE IEILDDGYKW RKYGKKSVKN SPNPRNYYRC STEGCNVKKR VERDKDDPSY  180
VVTTYEGMHN HVSPSTVYYA SQDAASGRFF VAGTQPPGSL N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26125195878Probable WRKY transcription factor 4
2lex_A2e-26125195878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G863420
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G863420_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283630.0KJ728363.1 Zea mays clone pUT6645 WRKY transcription factor (WRKY82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338874.11e-160probable WRKY transcription factor 50
TrEMBLK7V7141e-159K7V714_MAIZE; Putative WRKY DNA-binding domain superfamily protein (Fragment)
STRINGGRMZM5G863420_P011e-160(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.12e-41WRKY DNA-binding protein 51