PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G865626_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YA
Protein Properties Length: 189aa    MW: 20518.2 Da    PI: 10.3232
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G865626_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA42.22.7e-1374983458
          CBFB_NFYA 34 srkpylheSRhkhAlrRpRgsgGrF 58
                       s +pylheSRh+hA++R RgsgGrF
  GRMZM5G865626_P01 74 SSQPYLHESRHRHAMKRTRGSGGRF 98
                       579*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.7E-642101IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115216.15573101IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.3E-127498IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MADNLLYPQN KKGHILQPQI DSKEVYFEVA RSVLSYATKH SHIVLAFLIF TGCTVLLLQL  60
YSSPGKYASR SFLSSQPYLH ESRHRHAMKR TRGSGGRFLN TKQQLQEQNQ QHQASSGSMC  120
SKTIGNSIIS QSGPICTPSS DAAGASAASQ DRGCLPSVGF RPTANFSDQG GGGSKLVVNG  180
MQQRVSTIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18291RHRHAMKRTR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.127731e-179endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G865626
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G865626_P01
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9546161e-179EU954616.1 Zea mays clone 1474061 nuclear transcription factor Y subunit A-3 mRNA, complete cds.
GenBankKM6557521e-179KM655752.1 Zea mays NF-YA14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651393.18e-56nuclear transcription factor Y subunit A-3 isoform X1
RefseqXP_008651394.18e-56nuclear transcription factor Y subunit A-3 isoform X1
TrEMBLA0A3L6FQ213e-59A0A3L6FQ21_MAIZE; Nuclear transcription factor Y subunit A-3
STRINGGRMZM5G865626_P011e-138(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-11nuclear factor Y, subunit A5